ViewGene
Locus Name:
GeneID:
Location:

GeneID:3331
TrivialName: PA14_53790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53790
PAO1 Ortholog Locus:PA0810
Sequence Length:702
Protein Length:233
Start: 4769103
Stop: 4769804
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04199.1|AE004516_4 (AE004516) probable haloacid dehalogenase [Pseudomonas aeruginosa PAO1]
Identities = 231/233 (99%), Positives = 232/233 (99%)
Sequence:
ATGCGCGCGATCCTGTTCGATGTGTTCGGTACCCTGGTGGACTGGCGTTCCAGCCTGATCGAGCAGTTCCAG
GCGTTGGAGCGCGAACTCGGCGGAACCCTGCCCTGCGTGGAACTGACCGACCGCTGGCGCCAGCAATACAAG
CCGGCGATGGACCGGGTACGCAACGGTCAGGCGCCCTGGCAGCACCTCGACCAGTTGCACCGGCAGAGTCTC
GAGGCCCTGGCCGGAGAGTTCGGCCTGGCGCTGGACGAGGCCCTGCTGCAACGCATCACTGGCTTCTGGCAC
CGCCTGCGGCCGTGGCCGGACACGCTCGCCGGGATGCACGCGCTGAAGGCCGACTACTGGCTCGCCGCGCTG
AGCAACGGCAACACCGCGCTGATGCTCGACGTCGCGCGGCACGCCGGGCTGCCCTGGGACATGCTGCTGTGC
GCCGACCTGTTCGGCCACTACAAGCCCGACCCGCAGGTCTACCTCGGCGCCTGCCGCCTGCTCGACCTGCCG
CCGCAGGAGGTGATGCTCTGCGCGGCGCACAACTACGACCTCAAGGCCGCGCGCGCCCTCGGCCTGAAGACC
GCGTTCATCGCCCGGCCGCTGGAATACGGCCCCGGCCAGACCCAGGACCTCGCCGCCGAGCAGGACTGGGAC
CTGATCGCCAGCGACCTGCCGGACCTGCACCGGCAACTGGCGGCCTCGGCCTGA
Translation:
MRAILFDVFGTLVDWRSSLIEQFQALERELGGTLPCVELTDRWRQQYKPAMDRVRNGQAPWQHLDQLHRQSL
EALAGEFGLALDEALLQRITGFWHRLRPWPDTLAGMHALKADYWLAALSNGNTALMLDVARHAGLPWDMLLC
ADLFGHYKPDPQVYLGACRLLDLPPQEVMLCAAHNYDLKAARALGLKTAFIARPLEYGPGQTQDLAAEQDWD
LIASDLPDLHRQLAASA*
AnnotationID:3339GeneID:3331
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 16:04:45
Gene Name:
Confidence Code:3
GeneProduct:probable haloacid dehalogenase
Cell Localization:()
Synonyms:PA0810
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1011
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].
      CD-Length = 229 residues,  95.6% aligned
      Score =  106 bits (264), Expect = 6e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:6665




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23807




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3331
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5345
                           PA0810_tr
                           translation of PA0810
                           233
                           99.14
                           99.57
                           0
                           1233.0
     

     
     
149983
                           gb|AAG04199.1|AE004516_4
                           (AE004516) probable haloacid dehalogenase [Pseudomonas aeruginosa PAO1]
                           233
                           99.14
                           99.57
                           0
                           1233.0
     

     
     
149984
                           emb|CAE27948.1|
                           (BX572601) possible haloacid dehalogenase [Rhodopseudomonas palustris CGA009]
                           244
                           52.45
                           65.98
                           14
                           635.0
     

     
     
149985
                           gb|AAQ58539.1|
                           (AE016912) probable haloacid dehalogenase [Chromobacterium violaceum ATCC 12472]
                           241
                           49.79
                           62.65
                           10
                           591.0
     

     
     
149986
                           dbj|BAC49629.1|
                           (AP005951) blr4364 [Bradyrhizobium japonicum USDA 110]
                           241
                           48.13
                           65.14
                           10
                           589.0
     

     






      

          
GC ORFID: 46333How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0810Glimmer Score: 

          
Start: 184804Stop: 184103

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0810 translation of PA0810Homolog Bit Score 479.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene812 (ORF: BLASTX 202.0), t_PA0810 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCGATCCTGTTCGATGTGTTCGGTACCCTGGTGGACTGGCGTTCCAGCCTGATCGAGCAGTTCCAG 
GCGTTGGAGCGCGAACTCGGCGGAACCCTGCCCTGCGTGGAACTGACCGACCGCTGGCGCCAGCAATACAAG 
CCGGCGATGGACCGGGTACGCAACGGTCAGGCGCCCTGGCAGCACCTCGACCAGTTGCACCGGCAGAGTCTC 
GAGGCCCTGGCCGGAGAGTTCGGCCTGGCGCTGGACGAGGCCCTGCTGCAACGCATCACTGGCTTCTGGCAC 
CGCCTGCGGCCGTGGCCGGACACGCTCGCCGGGATGCACGCGCTGAAGGCCGACTACTGGCTCGCCGCGCTG 
AGCAACGGCAACACCGCGCTGATGCTCGACGTCGCGCGGCACGCCGGGCTGCCCTGGGACATGCTGCTGTGC 
GCCGACCTGTTCGGCCACTACAAGCCCGACCCGCAGGTCTACCTCGGCGCCTGCCGCCTGCTCGACCTGCCG 
CCGCAGGAGGTGATGCTCTGCGCGGCGCACAACTACGACCTCAAGGCCGCGCGCGCCCTCGGCCTGAAGACC 
GCGTTCATCGCCCGGCCGCTGGAATACGGCCCCGGCCAGACCCAGGACCTCGCCGCCGAGCAGGACTGGGAC 
CTGATCGCCAGCGACCTGCCGGACCTGCACCGGCAACTGGCGGCCTCGGCCTGA