ViewGene
Locus Name:
GeneID:
Location:

GeneID:3330
TrivialName: PA14_54590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54590
PAO1 Ortholog Locus:PA0750
Sequence Length:696
Protein Length:231
Start: 4839950
Stop: 4839255
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04139.1|AE004510_3 (AE004510) uracil-DNA glycosylase [Pseudomonas aeruginosa PAO1]
Identities = 230/231 (99%), Positives = 230/231 (99%)
Sequence:
ATGACCGATAACGACGACCGCATCAAGCTCGAGGCGAGCTGGAAGGAAGCGCTGCGCGAGGAATTCGACAAG
CCCTACATGAAGCAACTGGGCGAGTTCCTGCGCCAGGAGAAAGCCGCCGGCAAGGCGATCTTCCCGCCCGGG
CCGTTGATCTTCAACGCGCTGAACACCACGCCGCTGGAGAACGTCAAGGTGGTGATCATCGGCCAGGATCCC
TACCACGGGCCGGGCCAGGCCCACGGCCTGTGCTTCTCGGTGCAGCCCGGCGTGCCGACGCCGCCGTCCTTG
CAGAACATCTACAAGGAACTCAACCGCGACCTGAACATCCCGATTCCCAACAACGGCTACCTGCAGCGCTGG
GCGGAGCAGGGCGTGCTGTTGCTCAACACCTCGCTGACCGTCGAGCAGGCCAAGGCCGGCTCCCACGCCAAT
GCCGGCTGGCAGCCGTTCACCGACCGCGTCATCGAGGTGGTCAACGAGCGTTGCGAGCGCCTGGTGTTCCTG
CTCTGGGGCAGCCACGCGCAGAGCAAGCAGAAGCTGATCGACCCGCAGCGCCACCTGATCCTCAAGTCGGCG
CACCCGTCGCCGTTGTCGGCCTACCGCGGTTTCCTCGGCAACGGTCACTTCAGCCGCACCAACAAGTTCCTC
GAGCAGAACGGCAAGACGCCTATCGACTGGTCGCTGCCGGACCTCTGA
Translation:
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKAIFPPGPLIFNALNTTPLENVKVVIIGQDP
YHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDLNIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHAN
AGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFL
EQNGKTPIDWSLPDL*
AnnotationID:3338GeneID:3330
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 12:12:43
Gene Name:ung
Confidence Code:2
GeneProduct:uracil-DNA glycosylase
Cell Localization:()
Synonyms:PA0750
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0692
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0692, Ung, Uracil DNA glycosylase [DNA replication, recombination, and repair]
  CD-Length = 223 residues, 100.0% aligned
  Score =  368 bits (946), Expect = 6e-103






   
Genomic Context:






   
Comment:


















    ReferenceID:6663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23805




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3330
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5344
                           PA0750_tr
                           translation of PA0750
                           231
                           99.56
                           99.56
                           0
                           1233.0
     

     
     
149872
                           gb|AAG04139.1|AE004510_3
                           (AE004510) uracil-DNA glycosylase [Pseudomonas aeruginosa PAO1]
                           231
                           99.56
                           99.56
                           0
                           1233.0
     

     
     
149873
                           gb|AAN67035.1|AE016332_5
                           (AE016779) uracil-DNA glycosylase [Pseudomonas putida KT2440]
                           231
                           77.48
                           86.58
                           1
                           963.0
     

     
     
149874
                           gb|AAO57692.1|
                           (AE016871) uracil-DNA glycosylase [Pseudomonas syringae pv. tomato str. DC3000]
                           231
                           76.62
                           86.14
                           1
                           960.0
     

     
     
149876
                           gb|AAM38667.1|
                           (AE012031) uracil-DNA glycosylase [Xanthomonas axonopodis pv. citri str. 306]
                           241
                           60.99
                           72.19
                           10
                           777.0
     

     






      

          
GC ORFID: 46332How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0750Glimmer Score: 

          
Start: 113957Stop: 114652

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0750 translation of PA0750Homolog Bit Score 479.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2698 (ORF: BLASTX 374.0), t_PA0750 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGATAACGACGACCGCATCAAGCTCGAGGCGAGCTGGAAGGAAGCGCTGCGCGAGGAATTCGACAAG 
CCCTACATGAAGCAACTGGGCGAGTTCCTGCGCCAGGAGAAAGCCGCCGGCAAGGCGATCTTCCCGCCCGGG 
CCGTTGATCTTCAACGCGCTGAACACCACGCCGCTGGAGAACGTCAAGGTGGTGATCATCGGCCAGGATCCC 
TACCACGGGCCGGGCCAGGCCCACGGCCTGTGCTTCTCGGTGCAGCCCGGCGTGCCGACGCCGCCGTCCTTG 
CAGAACATCTACAAGGAACTCAACCGCGACCTGAACATCCCGATTCCCAACAACGGCTACCTGCAGCGCTGG 
GCGGAGCAGGGCGTGCTGTTGCTCAACACCTCGCTGACCGTCGAGCAGGCCAAGGCCGGCTCCCACGCCAAT 
GCCGGCTGGCAGCCGTTCACCGACCGCGTCATCGAGGTGGTCAACGAGCGTTGCGAGCGCCTGGTGTTCCTG 
CTCTGGGGCAGCCACGCGCAGAGCAAGCAGAAGCTGATCGACCCGCAGCGCCACCTGATCCTCAAGTCGGCG 
CACCCGTCGCCGTTGTCGGCCTACCGCGGTTTCCTCGGCAACGGTCACTTCAGCCGCACCAACAAGTTCCTC 
GAGCAGAACGGCAAGACGCCTATCGACTGGTCGCTGCCGGACCTCTGA