ViewGene
Locus Name:
GeneID:
Location:

GeneID:3329
TrivialName: PA14_11680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11680
PAO1 Ortholog Locus:PA4032
Sequence Length:717
Protein Length:238
Start: 1012365
Stop: 1013081
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07419.1|AE004820_4 (AE004820) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGCGTGTCGCGATACTGGACGACGAGTCGGCCGAACTGGACCGGGTCGAGCAGACCTTGCAGCAGATACCC
GCGCAGGGCGAACAGGCCTGGACGGTGCACCGTTTCGCCCGTGGCGAGGACCTGCTCAAGCAGCTCAAGCGG
GAAACCTTCGACCTGCTGATCCTCGACTGGCAGTTGCCGGACCTCAGCGGCCTGCAATTGCTGCGCTGGAGC
CGCGAGCATCTGGATGCGCCGCCGCCGGCGATCATGCTGACCAGCCGTGACGCCGAACAGGACATCGTGCAG
GCGTTGAACAGCGGCGCCGACGACTATGTCAGCAAGCCGTTCCGGCCCAACGAACTGAAGGCGCGGGTAGCC
GCCGTGCTGCGTCGCCACGGGGGAACGCGTCCCGCGCAGCATGAGGTGCAGACTTTCAACGACCTCAGCTTC
GACGATGCCGAGCTGACCGTGACCCGGGCCGGCGCGCCGATCAGCCTGACCGAGCGCGAATACCGCCTGGCC
CGCTGCCTGTTCGCCAACCTGGGACGGCCGTTATCGCGGGAATATCTCTACGAGCGCTTCTGGCCCCACGAG
GAAGTGTTGTCCTCGCGGCCGCTGGATACGCACATCTATCGCCTGCGCAACAAGCTTGGCCTGACCGCCGAG
CGTGGTTGGCAGTTGCTGACCATCTACGGCTACGGATATCGGTTGGAGAGCGTGGCGACGGTCGACTGA
Translation:
MRVAILDDESAELDRVEQTLQQIPAQGEQAWTVHRFARGEDLLKQLKRETFDLLILDWQLPDLSGLQLLRWS
REHLDAPPPAIMLTSRDAEQDIVQALNSGADDYVSKPFRPNELKARVAAVLRRHGGTRPAQHEVQTFNDLSF
DDAELTVTRAGAPISLTEREYRLARCLFANLGRPLSREYLYERFWPHEEVLSSRPLDTHIYRLRNKLGLTAE
RGWQLLTIYGYGYRLESVATVD*
AnnotationID:3337GeneID:3329
AnnotatorUID: urbach
Modification Date/Time: 2004-10-04 18:06:59
Gene Name:
Confidence Code:3
GeneProduct:probable two-component regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745,smart00448,cd00156,pfam00072
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10613 COG0745, OmpR, Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Length = 229
Score =  196 bits (499), Expect = 4e-51
Identities = 97/236 (41%), Positives = 138/236 (58%), Gaps = 8/236 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6661




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23803




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3329
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5342
                           PA4032_tr
                           translation of PA4032
                           238
                           99.99
                           99.99
                           0
                           1235.0
     

     
     
149863
                           gb|AAG07419.1|AE004820_4
                           (AE004820) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1235.0
     

     
     
149864
                           gb|AAK25287.1|
                           (AE005994) DNA-binding response regulator [Caulobacter crescentus CB15]
                           248
                           42.33
                           58.87
                           22
                           476.0
     

     
     
149867
                           emb|CAB94653.1|
                           (AL939130) putative two-component system response regulator [Streptomyces coelicolor A3(2)]
                           241
                           39.41
                           52.69
                           15
                           353.0
     

     
     
149865
                           emb|CAE30522.1|
                           (BX640437) probable two-component response regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           253
                           39.13
                           54.94
                           24
                           431.0
     

     






      

          
GC ORFID: 46331How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4032Glimmer Score: 

          
Start: 3941572Stop: 3940856

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4032 translation of PA4032Homolog Bit Score 480.0

          
Other Homologs:  t_PA5360 (ORF: BLASTX 114.0), psyr_15may02_Scaffold2_revised_gene2897 (ORF: BLASTX 112.0), t_PA4032 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGTCGCGATACTGGACGACGAGTCGGCCGAACTGGACCGGGTCGAGCAGACCTTGCAGCAGATACCC 
GCGCAGGGCGAACAGGCCTGGACGGTGCACCGTTTCGCCCGTGGCGAGGACCTGCTCAAGCAGCTCAAGCGG 
GAAACCTTCGACCTGCTGATCCTCGACTGGCAGTTGCCGGACCTCAGCGGCCTGCAATTGCTGCGCTGGAGC 
CGCGAGCATCTGGATGCGCCGCCGCCGGCGATCATGCTGACCAGCCGTGACGCCGAACAGGACATCGTGCAG 
GCGTTGAACAGCGGCGCCGACGACTATGTCAGCAAGCCGTTCCGGCCCAACGAACTGAAGGCGCGGGTAGCC 
GCCGTGCTGCGTCGCCACGGGGGAACGCGTCCCGCGCAGCATGAGGTGCAGACTTTCAACGACCTCAGCTTC 
GACGATGCCGAGCTGACCGTGACCCGGGCCGGCGCGCCGATCAGCCTGACCGAGCGCGAATACCGCCTGGCC 
CGCTGCCTGTTCGCCAACCTGGGACGGCCGTTATCGCGGGAATATCTCTACGAGCGCTTCTGGCCCCACGAG 
GAAGTGTTGTCCTCGCGGCCGCTGGATACGCACATCTATCGCCTGCGCAACAAGCTTGGCCTGACCGCCGAG 
CGTGGTTGGCAGTTGCTGACCATCTACGGCTACGGATATCGGTTGGAGAGCGTGGCGACGGTCGACTGA