ViewGene
Locus Name:
GeneID:
Location:

GeneID:3328
TrivialName: PA14_11610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11610
PAO1 Ortholog Locus:PA4038
Sequence Length:735
Protein Length:244
Start: 1006051
Stop: 1005317
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07425.1|AE004820_10 (AE004820) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 243/244 (99%), Positives = 243/244 (99%)
Sequence:
ATGACCGCCATCGGCACCATTTTCAGACGCGAGCTGAGCAGCTACTTCGCCACGCCGCTCGCCTATGTGTTC
ACCCTGGTATTCCTCGTCCTCTCCGGCGTGGCCACCTTCTACCTGGGCGATTTCTTCGAGCGCGGCCAGGCC
GACCTGGCGCCGTTCTTTTCCAGCCTGCCCTGGCTCTACCTCCTGCTGATCCCCGCGCTGGCCATGCGCCTG
TGGGCCGAGGAGCGCAAGTCCGGCTCCATCGAGATGCTGATGACCCTGCCCGTCTCCCGCGCCACCCTGGTC
ACCGGCAAGTTCCTGGCGGCCTGGTTCTGCGCCGGGCTGGCGTTGCTGCTGACCTTCCCGATGCCGCTGACG
GTGAACTACCTCGGCTCGCCCGACAACGGCGCGATCATCGCCGGCTACCTGGCCGGCTGGCTGCTGTCCGGC
GGCTACCTGGCCATCGGATCCTGCATGTCGGCGCTGGCGAAGAACCAGATCATCGCCTTTGCCCTGACCGTT
CTCGTCTGCCTGCTGTTCGTCGGCGCCGGCACTCCCCACGTGCAACAGGCGCTCTCCGGCTGGCTTCCGCAA
TGGCTGCTGGACGGCATTGCCTCGCTGAGCGTGCTGGTCCGTTTCGAGGCGCTCGGCCGGGGCGTGCTCGAC
GTCCGCGACCTGGCCTACTTCTGCAGCCTGATCGTCGCCTGGCTGGTCGCCACCACCATCGTCATCGACCTG
AAAAAGGCAGCGTAG
Translation:
MTAIGTIFRRELSSYFATPLAYVFTLVFLVLSGVATFYLGDFFERGQADLAPFFSSLPWLYLLLIPALAMRL
WAEERKSGSIEMLMTLPVSRATLVTGKFLAAWFCAGLALLLTFPMPLTVNYLGSPDNGAIIAGYLAGWLLSG
GYLAIGSCMSALAKNQIIAFALTVLVCLLFVGAGTPHVQQALSGWLPQWLLDGIASLSVLVRFEALGRGVLD
VRDLAYFCSLIVAWLVATTIVIDLKKAA*
AnnotationID:3336GeneID:3328
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 16:04:33
Gene Name:
Confidence Code:3
GeneProduct:possible ABC transporter permease component
Cell Localization:()
Synonyms:PA4038
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1277
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07059.1|AE004786_11  (AE004786) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Length: 244
PctIdentity: 70.49
Pct Similarity: 81.96
Gaps: 0
BitScore: 906.0






 
Structural Features:
gnl|CDD|10993 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function prediction only]
Length = 278
Score = 60.1 bits (145), Expect = 5e-10
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 29/271 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6659




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23801




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3328
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5340
                           PA4038_tr
                           translation of PA4038
                           244
                           99.59
                           99.59
                           0
                           1236.0
     

     
     
149861
                           gb|AAG07425.1|AE004820_10
                           (AE004820) hypothetical protein PA4038 [Pseudomonas aeruginosa PAO1]
                           244
                           99.59
                           99.59
                           0
                           1236.0
     

     
     
5341
                           PA3671_tr
                           translation of PA3671
                           244
                           70.49
                           81.96
                           0
                           906.0
     

     
     
149862
                           gb|AAG07059.1|AE004786_11
                           (AE004786) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           244
                           70.49
                           81.96
                           0
                           906.0
     

     






      

          
GC ORFID: 46330How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4038Glimmer Score: 

          
Start: 3947886Stop: 3948620

          
Length: 735


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4038 translation of PA4038Homolog Bit Score 480.0

          
Other Homologs:  t_PA3671 (ORF: BLASTX 353.0), t_PA4038 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCATCGGCACCATTTTCAGACGCGAGCTGAGCAGCTACTTCGCCACGCCGCTCGCCTATGTGTTC 
ACCCTGGTATTCCTCGTCCTCTCCGGCGTGGCCACCTTCTACCTGGGCGATTTCTTCGAGCGCGGCCAGGCC 
GACCTGGCGCCGTTCTTTTCCAGCCTGCCCTGGCTCTACCTCCTGCTGATCCCCGCGCTGGCCATGCGCCTG 
TGGGCCGAGGAGCGCAAGTCCGGCTCCATCGAGATGCTGATGACCCTGCCCGTCTCCCGCGCCACCCTGGTC 
ACCGGCAAGTTCCTGGCGGCCTGGTTCTGCGCCGGGCTGGCGTTGCTGCTGACCTTCCCGATGCCGCTGACG 
GTGAACTACCTCGGCTCGCCCGACAACGGCGCGATCATCGCCGGCTACCTGGCCGGCTGGCTGCTGTCCGGC 
GGCTACCTGGCCATCGGATCCTGCATGTCGGCGCTGGCGAAGAACCAGATCATCGCCTTTGCCCTGACCGTT 
CTCGTCTGCCTGCTGTTCGTCGGCGCCGGCACTCCCCACGTGCAACAGGCGCTCTCCGGCTGGCTTCCGCAA 
TGGCTGCTGGACGGCATTGCCTCGCTGAGCGTGCTGGTCCGTTTCGAGGCGCTCGGCCGGGGCGTGCTCGAC 
GTCCGCGACCTGGCCTACTTCTGCAGCCTGATCGTCGCCTGGCTGGTCGCCACCACCATCGTCATCGACCTG 
AAAAAGGCAGCGTAG