ViewGene

Locus Name:
GeneID:
Location:

GeneID:3327
TrivialName: PA14_14140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14140
PAO1 Ortholog Locus:PA3855
Sequence Length:702
Protein Length:233
Start: 1210134
Stop: 1210835
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07242.1|AE004802_11 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/233 (100%), Positives = 233/233 (100%)
Sequence:
ATGATCACGCTCTTCCAGTTCCCCGCCGCATTCAACGTACCCAATGCCAGTCCCTATTGCCTGAAACTGGAA
ACCTGGTTGCGCCTGGCCGGCCTGGAGTACCAGGTGAAGGTCGTCAGCGACCCGCGCAAGGCGCCCAAGGGC
AAGCTGCCCTACGTGCGTATCGAGGGCGAGGCGATCGGCGACAGCGAGATCGTCATCCGTACCCTCGGCGAG
CGCTACGGGGTCACTCTCGACGCTGGCCTGGACGCCCGAGGCAAGGGCTGGGCACGGGCGATCACGCGCCTG
TGCGACGAACACCTGTACTACCTGATGCTGTATTTCCGCTGGTTCGACGAGGACAGCTGGCGCGTGCTCAAG
CCGGTGTTCTTCGGCTCGCTGCCATTCGGCGTGCGCGACGCGGTGGCCTGGGCCATGCGCCGCAAGGTCCGC
GCTACCCTCAGGGCGCAGGGACTCGGGGTCCACGGCAGGGACGAACTGCTGGCCTTCGCCCGCGACGACCTC
GATGCCCTCGACGGCCTGCTTGGCCAGGTCCCGTACTACGGCGGCGAACATCCGTGCAGCGCCGATGCTGCC
GCTTACGGTATCCTCGCCAACCTCATCGAGGCGACCCTGGATACCCCGCTCAGCCATGTGGCGCGAGGCTAT
CCGCGCCTGGTGGCGTATTGCGAGCGGATGCGGGAGCGGGTCTGGAGTGAGTGA
Translation:
MITLFQFPAAFNVPNASPYCLKLETWLRLAGLEYQVKVVSDPRKAPKGKLPYVRIEGEAIGDSEIVIRTLGE
RYGVTLDAGLDARGKGWARAITRLCDEHLYYLMLYFRWFDEDSWRVLKPVFFGSLPFGVRDAVAWAMRRKVR
ATLRAQGLGVHGRDELLAFARDDLDALDGLLGQVPYYGGEHPCSADAAAYGILANLIEATLDTPLSHVARGY
PRLVAYCERMRERVWSE*
AnnotationID:3335GeneID:3327
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 08:08:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3855
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK24282.1| (AE005901) glutathione S-transferase, putative [Caulobacter
           crescentus CB15]
          Length = 230

 Score =  124 bits (310), Expect = 6e-28
 Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 2/220 (0%)

>emb|CAB55823.1| (AJ249207) glutathione S-transferase [Rhodococcus sp. AD45]
          Length = 238

 Score =  111 bits (278), Expect = 3e-24
 Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 14/239 (5%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:6657
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23799
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3327

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5339 PA3855_tr translation of PA3855 233 99.99 99.99 0 1236.0
149860 gb|AAG07242.1|AE004802_11 (AE004802) hypothetical protein PA3855 [Pseudomonas aeruginosa PAO1] 233 99.99 99.99 0 1236.0
GC ORFID: 46329How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3855Glimmer Score:
Start: 3743804Stop: 3743103
Length: 702
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3855 translation of PA3855Homolog Bit Score 480.0
Other Homologs: t_PA3855 (ORF: GLIMMER)
GC ORF Sequence
ATGATCACGCTCTTCCAGTTCCCCGCCGCATTCAACGTACCCAATGCCAGTCCCTATTGCCTGAAACTGGAA
ACCTGGTTGCGCCTGGCCGGCCTGGAGTACCAGGTGAAGGTCGTCAGCGACCCGCGCAAGGCGCCCAAGGGC
AAGCTGCCCTACGTGCGTATCGAGGGCGAGGCGATCGGCGACAGCGAGATCGTCATCCGTACCCTCGGCGAG
CGCTACGGGGTCACTCTCGACGCTGGCCTGGACGCCCGAGGCAAGGGCTGGGCACGGGCGATCACGCGCCTG
TGCGACGAACACCTGTACTACCTGATGCTGTATTTCCGCTGGTTCGACGAGGACAGCTGGCGCGTGCTCAAG
CCGGTGTTCTTCGGCTCGCTGCCATTCGGCGTGCGCGACGCGGTGGCCTGGGCCATGCGCCGCAAGGTCCGC
GCTACCCTCAGGGCGCAGGGACTCGGGGTCCACGGCAGGGACGAACTGCTGGCCTTCGCCCGCGACGACCTC
GATGCCCTCGACGGCCTGCTTGGCCAGGTCCCGTACTACGGCGGCGAACATCCGTGCAGCGCCGATGCTGCC
GCTTACGGTATCCTCGCCAACCTCATCGAGGCGACCCTGGATACCCCGCTCAGCCATGTGGCGCGAGGCTAT
CCGCGCCTGGTGGCGTATTGCGAGCGGATGCGGGAGCGGGTCTGGAGTGAGTGA