ViewGene
Locus Name:
GeneID:
Location:

GeneID:3326
TrivialName: PA14_69320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69320
PAO1 Ortholog Locus:PA5250
Sequence Length:759
Protein Length:252
Start: 6184233
Stop: 6183475
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08635.1|AE004937_7 (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/252 (99%), Positives = 251/252 (99%)
Sequence:
ATGGAATGGCTCGCCAGTCCTGAAATCTGGGTCGCGTTCCTGACCCTGACCGCCCTGGAAATCGTCCTCGGC
ATCGACAACATCATCTTCATCTCGATCCTGGTCGGACGCCTGCCGCCGGCCCAGCAACCGAAGGCGCGCTTC
TTCGGCCTGGCCCTGGCCATGGGCACGCGGATCCTGCTGTTGCTCTCGATCACCTGGGTCATGCGCCTGACC
ACCGACCTGTTCCACCTGTTCGGCCAGGGCATCTCCGGGCGTGACCTGATCCTCTTCTTCGGCGGCCTGTTC
CTGCTGTTCAAGAGCACCATGGAGATCTACCACAGCCTGGAAGGCGCGGAAGAAGAGCAGAAGAGCGGCGGC
AAGGCCCACGGCTTCATGGGCATCATCGTCCAGATCGCGATCATCGACATCATCTTCTCCCTGGACTCGGTG
ATCACCGCCGTCGGTCTGGTGCAGAACGTGCCGGTGATGGTCGCGGCGATCGTCATCTCGGTCGGCGTGATG
ATGCTGGCGGCAGGCACCATCAGCGACTTCATCGAGAAACACCCATCGCTGAAGATGCTCGCCCTGTCGTTC
CTCATCGTGGTCGGAACCGTGCTGGTGGCCGAGTCCTTCGAAGTGCACGTGCCGAAAGGCTACGTCTACTTC
GCCATGGCCTTCTCCCTGGCGGTGGAGGCGCTGAACATCCGCTTGCGCGGGGCCATGGCGCGCAAGCGCGGC
GAAGAGCCGGTGAAGCTGCGCAAGGGTTCGCCGGACTGA
Translation:
MEWLASPEIWVAFLTLTALEIVLGIDNIIFISILVGRLPPAQQPKARFFGLALAMGTRILLLLSITWVMRLT
TDLFHLFGQGISGRDLILFFGGLFLLFKSTMEIYHSLEGAEEEQKSGGKAHGFMGIIVQIAIIDIIFSLDSV
ITAVGLVQNVPVMVAAIVISVGVMMLAAGTISDFIEKHPSLKMLALSFLIVVGTVLVAESFEVHVPKGYVYF
AMAFSLAVEALNIRLRGAMARKRGEEPVKLRKGSPD*
AnnotationID:3334GeneID:3326
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane transport protein
Cell Localization:()
Synonyms:PA5250
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0861,pfam03741
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC21734.1| (U32690) conserved hypothetical transmembrane protein [Haemophilus
           influenzae Rd]
          Length = 237

 Score =  284 bits (727), Expect = 3e-76
 Identities = 136/234 (58%), Positives = 181/234 (77%)

>gb|AAL21882.1| (AE008838) putative integral membrane transport protein [Salmonella
           typhimurium LT2]
          Length = 237

 Score =  272 bits (695), Expect = 2e-72
 Identities = 139/227 (61%), Positives = 177/227 (77%), Gaps = 2/227 (0%)

>gb|AAP18154.1| (AE016988) putative transport protein [Shigella flexneri 2a str.
           2457T]
          Length = 237

 Score =  271 bits (693), Expect = 3e-72
 Identities = 139/227 (61%), Positives = 178/227 (78%), Gaps = 2/227 (0%)






 
Structural Features:
COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance 
[Inorganic ion transport and metabolism]
CD-Length = 254 residues,  97.2% aligned
Score =  218 bits (558), Expect = 4e-58
Identities = 119/247 (48%), Positives = 161/247 (65%), Gaps = 4/247 (1%)

pfam03741, TerC, Integral membrane protein TerC family.
CD-Length = 222 residues, 100.0% aligned
Score =  184 bits (468), Expect = 9e-48
Identities = 94/222 (42%), Positives = 129/222 (58%), Gaps = 8/222 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6655




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23797




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34831




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3326_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3326
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5336
                           PA5250_tr
                           translation of PA5250
                           252
                           99.20
                           99.60
                           0
                           1237.0
     

     
     
149766
                           gb|AAG08635.1|AE004937_7
                           (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           252
                           99.20
                           99.60
                           0
                           1237.0
     

     
     
5337
                           PA5469_tr
                           translation of PA5469
                           256
                           80.46
                           87.50
                           6
                           1011.0
     

     
     
149767
                           gb|AAG08854.1|AE004959_10
                           (AE004959) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           256
                           80.46
                           87.50
                           6
                           1011.0
     

     
     
149768
                           gb|AAN65780.1|AE016204_3
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           268
                           73.88
                           82.08
                           19
                           955.0
     

     






      

          
GC ORFID: 46328How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5250Glimmer Score: 

          
Start: 5447920Stop: 5447162

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5250 translation of PA5250Homolog Bit Score 481.0

          
Other Homologs:  t_PA5469 (ORF: BLASTX 395.0), psyr_15may02_Scaffold1_revised_gene1357 (ORF: BLASTX 234.0), t_PA5250 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAATGGCTCGCCAGTCCTGAAATCTGGGTCGCGTTCCTGACCCTGACCGCCCTGGAAATCGTCCTCGGC 
ATCGACAACATCATCTTCATCTCGATCCTGGTCGGACGCCTGCCGCCGGCCCAGCAACCGAAGGCGCGCTTC 
TTCGGCCTGGCCCTGGCCATGGGCACGCGGATCCTGCTGTTGCTCTCGATCACCTGGGTCATGCGCCTGACC 
ACCGACCTGTTCCACCTGTTCGGCCAGGGCATCTCCGGGCGTGACCTGATCCTCTTCTTCGGCGGCCTGTTC 
CTGCTGTTCAAGAGCACCATGGAGATCTACCACAGCCTGGAAGGCGCGGAAGAAGAGCAGAAGAGCGGCGGC 
AAGGCCCACGGCTTCATGGGCATCATCGTCCAGATCGCGATCATCGACATCATCTTCTCCCTGGACTCGGTG 
ATCACCGCCGTCGGTCTGGTGCAGAACGTGCCGGTGATGGTCGCGGCGATCGTCATCTCGGTCGGCGTGATG 
ATGCTGGCGGCAGGCACCATCAGCGACTTCATCGAGAAACACCCATCGCTGAAGATGCTCGCCCTGTCGTTC 
CTCATCGTGGTCGGAACCGTGCTGGTGGCCGAGTCCTTCGAAGTGCACGTGCCGAAAGGCTACGTCTACTTC 
GCCATGGCCTTCTCCCTGGCGGTGGAGGCGCTGAACATCCGCTTGCGCGGGGCCATGGCGCGCAAGCGCGGC 
GAAGAGCCGGTGAAGCTGCGCAAGGGTTCGCCGGACTGA