ViewGene
Locus Name:
GeneID:
Location:

GeneID:3325
TrivialName: PA14_67030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67030
PAO1 Ortholog Locus:PA5074
Sequence Length:735
Protein Length:244
Start: 5983595
Stop: 5982861
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08459.1|AE004920_9 (AE004920) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 244/244 (100%), Positives = 244/244 (100%)
Sequence:
GTGATTGAAGTACGCAACCTGCTGAAGGTCTTCGATACCCGCGGCCAGGTAGTGCGCGCGGTGGACGACGTG
AGTACCCGCGTGGCCAGGGGCGAGGTGCTGGTGGTGATCGGTCCGTCCGGTTCCGGCAAGTCGACCTTCCTG
CGCTGCCTGAACGGCCTGGAGGAGTTCGACGAAGGCTCGGTGAGCATCGACGGCGTCGACCTGGCCGACCCG
AGGACCGACATCAATGCCTACCGCCGCGAAGTCGGCATGGTGTTCCAGCATTTCAACCTGTTCCCGCACATG
ACCGTGCTCGAGAACCTCTGCCTGGCCCAGCGCGTGGTGCGCAAACGCGGCAAGGCCGAGCGCGAGGCCAAG
GCGCGGGCGCTGCTGGCCAAGGTCGGTATCGGGCAGAAGGCCGACGAATATCCCTCGCGCCTGTCCGGCGGC
CAGCAGCAGCGCGTGGCGATCGCTCGCGCGTTGTGCATGGACCCCAAGGTGATGCTGTTCGACGAACCGACC
TCGGCGCTCGATCCGGAGATGGTCGGCGAAGTCCTCGACGTCATGAAGACCCTGGCCGTGGAAGGCATGACC
ATGGTCTGCGTGACCCACGAGATGGGCTTTGCCCGCGAAGTGGCCGACCGCGTGCTGTTCTTCGACCACGGC
AAGCTGCTGGAGGACGCGCCGCCGGCGCAGTTCTTCGACAATCCGCAGGACCCGCGGGCCCAGGCCTTCCTC
CGCCAGGTCCTCTAG
Translation:
MIEVRNLLKVFDTRGQVVRAVDDVSTRVARGEVLVVIGPSGSGKSTFLRCLNGLEEFDEGSVSIDGVDLADP
RTDINAYRREVGMVFQHFNLFPHMTVLENLCLAQRVVRKRGKAEREAKARALLAKVGIGQKADEYPSRLSGG
QQQRVAIARALCMDPKVMLFDEPTSALDPEMVGEVLDVMKTLAVEGMTMVCVTHEMGFAREVADRVLFFDHG
KLLEDAPPAQFFDNPQDPRAQAFLRQVL*
AnnotationID:3333GeneID:3325
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:46
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA5074
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1126,COG4598,COG1136
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70587.1|AE016701_7 (AE016792) amino acid ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 244

 Score =  430 bits (1106), Expect = e-120
 Identities = 216/244 (88%), Positives = 232/244 (95%)

>gb|AAL94997.1| (AE010589) Amino acid transport ATP-binding protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 242

 Score =  288 bits (737), Expect = 2e-77
 Identities = 144/244 (59%), Positives = 184/244 (75%), Gaps = 4/244 (1%)

>gb|AAP24656.1| (AE017026) amino acid ABC transporter, ATP-binding protein
           [Bacillus anthracis str. Ames]
          Length = 243

 Score =  286 bits (731), Expect = 1e-76
 Identities = 144/244 (59%), Positives = 181/244 (74%), Gaps = 4/244 (1%)








 
Structural Features:
COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  99.6% aligned
Score =  387 bits (995), Expect = 8e-109
Identities = 159/244 (65%), Positives = 189/244 (77%), Gaps = 5/244 (2%)

COG4598, HisP, ABC-type histidine transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 256 residues,  97.3% aligned
Score =  269 bits (690), Expect = 2e-73
Identities = 136/254 (53%), Positives = 171/254 (67%), Gaps = 17/254 (6%)

COG1136, SalX, ABC-type antimicrobial peptide transport system, 
ATPase component 
[Defense mechanisms]
CD-Length = 226 residues,  98.7% aligned
Score =  221 bits (564), Expect = 8e-59
Identities = 96/225 (42%), Positives = 140/225 (62%), Gaps = 6/225 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14797




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23795




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34995




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3325_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3325
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5327
                           PA5074_tr
                           translation of PA5074
                           244
                           99.99
                           99.99
                           0
                           1238.0
     

     
     
149107
                           gb|AAG08459.1|AE004920_9
                           (AE004920) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           244
                           99.59
                           99.99
                           0
                           1235.0
     

     
     
149108
                           gb|AAN70587.1|AE016701_7
                           (AE016792) amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           244
                           88.11
                           95.08
                           0
                           1102.0
     

     
     
149109
                           gb|AAR36794.1|
                           (AE017219) amino acid ABC transporter, ATP-binding protein [Geobacter sulfurreducens PCA]
                           244
                           63.11
                           75.81
                           4
                           761.0
     

     
     
149117
                           dbj|BAB05182.1|
                           (AP001512) ABC transporter (ATP-binding protein) [Bacillus halodurans]
                           244
                           61.47
                           74.18
                           4
                           726.0
     

     






      

          
GC ORFID: 46327How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5074Glimmer Score: 

          
Start: 5247279Stop: 5246545

          
Length: 735


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5074 translation of PA5074Homolog Bit Score 481.0

          
Other Homologs:  t_PA1339 (ORF: BLASTX 270.0), psyr_15may02_Scaffold3_revised_gene4390 (ORF: BLASTX 269.0), psyr_15may02_Scaffold5_revised_gene6133 (ORF: BLASTX 266.0), t_PA4192 (ORF: BLASTX 263.0), t_PA1256 (ORF: BLASTX 256.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 239.0), psyr_15may02_Scaffold2_revised_gene3873 (ORF: BLASTX 236.0), psyr_15may02_Scaffold2_revised_gene3825 (ORF: BLASTX 235.0), psyr_15may02_Scaffold5_revised_gene6103 (ORF: BLASTX 233.0), t_PA5152 (ORF: BLASTX 223.0), psyr_15may02_Scaffold6_revised_gene6950 (ORF: BLASTX 221.0), psyr_15may02_Scaffold7_revised_gene7435 (ORF: BLASTX 215.0), t_PA2926 (ORF: BLASTX 214.0), psyr_15may02_Scaffold7_revised_gene7195 (ORF: BLASTX 213.0), t_PA0892 (ORF: BLASTX 211.0), psyr_15may02_Scaffold7_revised_gene7315 (ORF: BLASTX 167.0), t_PA5074 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATTGAAGTACGCAACCTGCTGAAGGTCTTCGATACCCGCGGCCAGGTAGTGCGCGCGGTGGACGACGTG 
AGTACCCGCGTGGCCAGGGGCGAGGTGCTGGTGGTGATCGGTCCGTCCGGTTCCGGCAAGTCGACCTTCCTG 
CGCTGCCTGAACGGCCTGGAGGAGTTCGACGAAGGCTCGGTGAGCATCGACGGCGTCGACCTGGCCGACCCG 
AGGACCGACATCAATGCCTACCGCCGCGAAGTCGGCATGGTGTTCCAGCATTTCAACCTGTTCCCGCACATG 
ACCGTGCTCGAGAACCTCTGCCTGGCCCAGCGCGTGGTGCGCAAACGCGGCAAGGCCGAGCGCGAGGCCAAG 
GCGCGGGCGCTGCTGGCCAAGGTCGGTATCGGGCAGAAGGCCGACGAATATCCCTCGCGCCTGTCCGGCGGC 
CAGCAGCAGCGCGTGGCGATCGCTCGCGCGTTGTGCATGGACCCCAAGGTGATGCTGTTCGACGAACCGACC 
TCGGCGCTCGATCCGGAGATGGTCGGCGAAGTCCTCGACGTCATGAAGACCCTGGCCGTGGAAGGCATGACC 
ATGGTCTGCGTGACCCACGAGATGGGCTTTGCCCGCGAAGTGGCCGACCGCGTGCTGTTCTTCGACCACGGC 
AAGCTGCTGGAGGACGCGCCGCCGGCGCAGTTCTTCGACAATCCGCAGGACCCGCGGGCCCAGGCCTTCCTC 
CGCCAGGTCCTCTAG