ViewGene
Locus Name:
GeneID:
Location:

GeneID:3324
TrivialName: PA14_56090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56090
PAO1 Ortholog Locus:PA4317
Sequence Length:738
Protein Length:245
Start: 5009374
Stop: 5010111
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07705.1|AE004848_4 (AE004848) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 245/245 (100%), Positives = 245/245 (100%)
Sequence:
ATGAACGACACCAGCAATCCCTACGCCACCCCCGCCAGCGCCCTGCAACCGACCCAGGCGGTGCCGCCGGTC
ATCGGCGACTACGACTTCCGCATCGGCGACGTGATCAGCGAAGCCTGGGCCAAGATCAAGGGCGTCAAAGGC
ATCCTGATCGGCGCCTTCGTGGTCTACAGCGTGGTGATCCAGACCATCACCTTCATCCTCACCCTGCTCTTC
GGCGGTATCGGCCTGATGAGCGAGGCCGATCCCATCGCCTTCGCGGTCGGCCAGATGATCGCCAGCCTCGTC
GCCACGGCGGTGGGCTACCCGTTCTTCACCGGCCTGACCATGATCGGCATCCGCCGCGCCGCCGACCAGCCG
GCGACCTTCAACGAAATGTTCAACTACTTCGGCATGCTGGTGCCGCTGCTGCTCACCGGCCTGCTGATGATG
CTGATGGTCTACGTCGGCTTCTTCCTGCTGATCATCCCCGGCCTCTACCTGAGCGTCGCCTACATGCTCGCC
CTGCCGCTGGTGGCCGAGCGCGGCCTGACGCCCTGGCAGGCCCTGGAAACCTCGCGCAAGGCCATCAGCCGC
CACTGGTTCAAGGTGTTCGGCCTGCTGCTGGTGCTGAGCCTGCTGATGCTGGTGAGCATGATCCCGCTGTTC
ATCGGCCTGATCTGGACCGGCCCGCTGTTCGTCGTTTCCATGGGTATTCTCTACCGCACCATCTTCGGCGTT
CGCCCGCTGGGCAACTGA
Translation:
MNDTSNPYATPASALQPTQAVPPVIGDYDFRIGDVISEAWAKIKGVKGILIGAFVVYSVVIQTITFILTLLF
GGIGLMSEADPIAFAVGQMIASLVATAVGYPFFTGLTMIGIRRAADQPATFNEMFNYFGMLVPLLLTGLLMM
LMVYVGFFLLIIPGLYLSVAYMLALPLVAERGLTPWQALETSRKAISRHWFKVFGLLLVLSLLMLVSMIPLF
IGLIWTGPLFVVSMGILYRTIFGVRPLGN*
AnnotationID:3332GeneID:3324
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 13:01:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4317
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23793




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36666




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3324_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3324
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5326
                           PA4317_tr
                           translation of PA4317
                           245
                           99.99
                           99.99
                           0
                           1238.0
     

     
     
149106
                           gb|AAG07705.1|AE004848_4
                           (AE004848) hypothetical protein PA4317 [Pseudomonas aeruginosa PAO1]
                           245
                           99.99
                           99.99
                           0
                           1238.0
     

     






      

          
GC ORFID: 46326How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4317Glimmer Score: 

          
Start: 4273050Stop: 4273787

          
Length: 738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4317 translation of PA4317Homolog Bit Score 481.0

          
Other Homologs:  t_PA4317 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACACCAGCAATCCCTACGCCACCCCCGCCAGCGCCCTGCAACCGACCCAGGCGGTGCCGCCGGTC 
ATCGGCGACTACGACTTCCGCATCGGCGACGTGATCAGCGAAGCCTGGGCCAAGATCAAGGGCGTCAAAGGC 
ATCCTGATCGGCGCCTTCGTGGTCTACAGCGTGGTGATCCAGACCATCACCTTCATCCTCACCCTGCTCTTC 
GGCGGTATCGGCCTGATGAGCGAGGCCGATCCCATCGCCTTCGCGGTCGGCCAGATGATCGCCAGCCTCGTC 
GCCACGGCGGTGGGCTACCCGTTCTTCACCGGCCTGACCATGATCGGCATCCGCCGCGCCGCCGACCAGCCG 
GCGACCTTCAACGAAATGTTCAACTACTTCGGCATGCTGGTGCCGCTGCTGCTCACCGGCCTGCTGATGATG 
CTGATGGTCTACGTCGGCTTCTTCCTGCTGATCATCCCCGGCCTCTACCTGAGCGTCGCCTACATGCTCGCC 
CTGCCGCTGGTGGCCGAGCGCGGCCTGACGCCCTGGCAGGCCCTGGAAACCTCGCGCAAGGCCATCAGCCGC 
CACTGGTTCAAGGTGTTCGGCCTGCTGCTGGTGCTGAGCCTGCTGATGCTGGTGAGCATGATCCCGCTGTTC 
ATCGGCCTGATCTGGACCGGCCCGCTGTTCGTCGTTTCCATGGGTATTCTCTACCGCACCATCTTCGGCGTT 
CGCCCGCTGGGCAACTGA