ViewGene
Locus Name:
GeneID:
Location:

GeneID:3323
TrivialName: PA14_14110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14110
PAO1 Ortholog Locus:PA3857
Sequence Length:717
Protein Length:238
Start: 1208798
Stop: 1209514
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07244.1|AE004802_13 (AE004802) phosphatidylcholine synthase [Pseudomonas aeruginosa PAO1]
Identities = 237/238 (99%), Positives = 237/238 (99%)
Sequence:
TTGCCCGTGAACCTATCGATGACTCCCATCAACAAAGCCAAGGCCTGGGGCGTCCACGCCGTCACCGCCAGC
GGCGTGATCCTGGCCTTGCTGGCCCTGCTCGCGCTGGTCGACAACAAACCCCAGGCCTGCCTGCTCTGGCTT
GGCCTGGCCCTACTGGTGGACGGCCTCGACGGCACCCTGGCGCGCAAGTACGAAGTCAAGGAAATGCTGCCG
CATTTCGACGGCTCGGTGCTCGACCTGGTGATCGACTACCTGACCTACGTGTTCATCCCGGCCATCTTCATC
TACCGCTACATCCCCCTGCCGGAGCATTTCGAACTGCTGGCGGTGGGCGTGATTCTGGTTTCGTCGCTGTTC
TGCTTCTGCAACGTCAACATGAAGAGCACCGACAACTACTTCGTTGGCTTCCCGGCCGCCTGGAACGTGGTG
GCGGTGTACTTCTACGTGCTCGACCTGCACCCCTGGGTCAACCTCGTCACGGTGCTGGTGCTGGCCGCCCTG
ACCCTGACCCGGATGAAGTTCCTCCACCCGTTCCGCGTGCGCCAGTTCATGCCGTTGAACATCGCGGTGACC
TTCGTCTGGCTGATCAGCAGCGGTCTGCTGATCGTCCAGCAGCCGGCCGATCTGCCGATCCTGCTCGGCCTG
TGGTTCGCCGCCTCGGCCTATTTCGTCGGTATCTGCCTCTGGCGCAGCGCCCGCGAGTGGTTCGGCTGA
Translation:
MPVNLSMTPINKAKAWGVHAVTASGVILALLALLALVDNKPQACLLWLGLALLVDGLDGTLARKYEVKEMLP
HFDGSVLDLVIDYLTYVFIPAIFIYRYIPLPEHFELLAVGVILVSSLFCFCNVNMKSTDNYFVGFPAAWNVV
AVYFYVLDLHPWVNLVTVLVLAALTLTRMKFLHPFRVRQFMPLNIAVTFVWLISSGLLIVQQPADLPILLGL
WFAASAYFVGICLWRSAREWFG*
AnnotationID:3331GeneID:3323
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:06
Gene Name:pcs
Confidence Code:1
GeneProduct:Phosphatidylserine synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1183
Secondary Functional Category(ies):
EC Number:2.7.8.24
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54534.1| (AE016859) CDP-alcohol phosphatidyltransferase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 239

 Score =  337 bits (863), Expect = 5e-92
 Identities = 154/229 (67%), Positives = 190/229 (82%)

>dbj|BAB48080.1| (AP002995) phosphatidylcholine synthase [Mesorhizobium loti]
          Length = 268

 Score =  168 bits (426), Expect = 2e-41
 Identities = 81/194 (41%), Positives = 120/194 (61%)






 
Structural Features:
COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]
CD-Length = 234 residues, 100.0% aligned
Score =  144 bits (364), Expect = 2e-35
Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 10/238 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14795




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23791




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31707




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3323_cdd.html


    		




 
URL:

















    ReferenceID:34322




  
Author/Investigator(s):
        Wilderman PJ, Vasil AI, Martin WE, Murphy RC, Vasil ML.





  
Title:
        Pseudomonas aeruginosa synthesizes phosphatidylcholine by use of the phosphatidylcholine synthase pathway.




  
PubMed:
        12169604


MedLine:
        




    
Source:
J Bacteriol. 2002 Sep;184(17):4792-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12169604









           
Homologs By Global Alignment 

           

       



     
Gene ID:3323
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5325
                           PA3857_tr
                           translation of PA3857
                           238
                           99.15
                           99.57
                           0
                           1237.0
     

     
     
149101
                           gb|AAG07244.1|AE004802_13
                           (AE004802) phosphatidylcholine synthase [Pseudomonas aeruginosa PAO1]
                           238
                           99.15
                           99.57
                           0
                           1237.0
     

     
     
149102
                           gb|AAO54534.1|
                           (AE016859) CDP-alcohol phosphatidyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           63.63
                           79.33
                           7
                           859.0
     

     
     
149104
                           dbj|BAC49850.1|
                           (AP005951) phosphatidylcholine synthase [Bradyrhizobium japonicum USDA 110]
                           291
                           31.27
                           43.29
                           77
                           371.0
     

     
     
149105
                           emb|CAD73828.1|
                           (BX294140) probable phosphatidylcholine synthase [Pirellula sp.] [Pirellula sp. 1]
                           279
                           30.46
                           46.59
                           57
                           310.0
     

     






      

          
GC ORFID: 46325How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3857Glimmer Score: 

          
Start: 3745140Stop: 3744424

          
Length: 717


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3857 translation of PA3857Homolog Bit Score 481.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5152 (ORF: BLASTX 338.0), t_PA3857 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCCGTGAACCTATCGATGACTCCCATCAACAAAGCCAAGGCCTGGGGCGTCCACGCCGTCACCGCCAGC 
GGCGTGATCCTGGCCTTGCTGGCCCTGCTCGCGCTGGTCGACAACAAACCCCAGGCCTGCCTGCTCTGGCTT 
GGCCTGGCCCTACTGGTGGACGGCCTCGACGGCACCCTGGCGCGCAAGTACGAAGTCAAGGAAATGCTGCCG 
CATTTCGACGGCTCGGTGCTCGACCTGGTGATCGACTACCTGACCTACGTGTTCATCCCGGCCATCTTCATC 
TACCGCTACATCCCCCTGCCGGAGCATTTCGAACTGCTGGCGGTGGGCGTGATTCTGGTTTCGTCGCTGTTC 
TGCTTCTGCAACGTCAACATGAAGAGCACCGACAACTACTTCGTTGGCTTCCCGGCCGCCTGGAACGTGGTG 
GCGGTGTACTTCTACGTGCTCGACCTGCACCCCTGGGTCAACCTCGTCACGGTGCTGGTGCTGGCCGCCCTG 
ACCCTGACCCGGATGAAGTTCCTCCACCCGTTCCGCGTGCGCCAGTTCATGCCGTTGAACATCGCGGTGACC 
TTCGTCTGGCTGATCAGCAGCGGTCTGCTGATCGTCCAGCAGCCGGCCGATCTGCCGATCCTGCTCGGCCTG 
TGGTTCGCCGCCTCGGCCTATTTCGTCGGTATCTGCCTCTGGCGCAGCGCCCGCGAGTGGTTCGGCTGA