ViewGene
Locus Name:
GeneID:
Location:

GeneID:3321
TrivialName: PA14_17940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17940
PAO1 Ortholog Locus:PA3583
Sequence Length:756
Protein Length:251
Start: 1542602
Stop: 1541847
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06971.1|AE004779_3 (AE004779) glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa PAO1]
Identities = 251/251 (100%), Positives = 251/251 (100%)
Sequence:
ATGAACCTGCCCCCCCGACAGCAAAGCATCATCGAGGAGGTCCGCGAGCGCGGTTACCTGAGCATCGAGGAG
ATGGCGCAGATGTTCGCGGTCACCCCGCAGACCATCCGCCGCGACATCAACCAGCTCGCCGAACAGGGACTG
CTGCGCCGCTACCACGGCGGTGCGGCCTACGATTCGAGCATCGAGAACACCGCCTACACCATGCGCGCCGAC
CAGATGCGCGACGAGAAGCAGCGCATCGCCGAAGCCGTGGCCAGCCTGGTGCCGGACAACGCCTCGCTGTTC
ATCAACATCGGCACCACCACCGAGGCCATCGCCCGCGCCCTGCTCAACCACCGTAACCTGAAGATCATCACC
AACAACCTGCACGTGGCCGCCACCCTCAGCGCCAAGGAAGACTTCGAAGTGCTGGTCGCCGGCGGCACCGTA
CGCAGCGACGGCGGCATCGTCGGCCAGGCCGCGGTGGACTTCATCCAGCAGTTCCGCGTCGACTTCGCCCTG
GTCGGCATCAGCGGCATCGACGAGGATGGCAGCCTGCTCGACTTCGACTACCAGGAAGTGCGCGTATCCCAG
GCGATCATCGACAACGCGCGGCAAGTGTTCCTGGCCGCCGACTCGAGCAAGTTCGGGCGCAACGCGGTGGTC
CGCCTGGGACCGATCTCGCTGGTCAACCGGGTCATCAGCGACAGCCCGCCGCCCGCCGCCATCGCCCGCCTG
ATGGCACAGCACAAGGTTCACCTGGACCTGGTCTGA
Translation:
MNLPPRQQSIIEEVRERGYLSIEEMAQMFAVTPQTIRRDINQLAEQGLLRRYHGGAAYDSSIENTAYTMRAD
QMRDEKQRIAEAVASLVPDNASLFINIGTTTEAIARALLNHRNLKIITNNLHVAATLSAKEDFEVLVAGGTV
RSDGGIVGQAAVDFIQQFRVDFALVGISGIDEDGSLLDFDYQEVRVSQAIIDNARQVFLAADSSKFGRNAVV
RLGPISLVNRVISDSPPPAAIARLMAQHKVHLDLV*
AnnotationID:3329GeneID:3321
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 09:09:49
Gene Name:glpR
Confidence Code:1
GeneProduct:glycerol-3-phosphate regulon repressor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:transcriptional repressor of the glp operon
Functional Category Confidence Code:5
COGs:COG1349,pfam00455
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57625.1| (AE016871) glycerol-3-phosphate regulon repressor [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 251

 Score =  402 bits (1032), Expect = e-111
 Identities = 198/251 (78%), Positives = 228/251 (90%)

>gb|AAN82638.1|AE016768_56 (AE016768) Glycerol-3-phosphate regulon repressor [Escherichia coli
           CFT073]
          Length = 269

 Score =  283 bits (725), Expect = 5e-76
 Identities = 139/251 (55%), Positives = 190/251 (75%), Gaps = 1/251 (0%)

>emb|CAD16753.1| (AL646073) PROBABLE GLYCEROL-3-PHOSPHATE REGULON REPRESSOR
           TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 261

 Score =  247 bits (630), Expect = 5e-65
 Identities = 127/245 (51%), Positives = 174/245 (71%), Gaps = 1/245 (0%)








 
Structural Features:
COG1349, GlpR, Transcriptional regulators of sugar metabolism 
[Transcription / Carbohydrate transport and metabolism]
CD-Length = 253 residues,  99.6% aligned
Score =  257 bits (657), Expect = 2e-69
Identities = 108/252 (42%), Positives = 161/252 (63%), Gaps = 1/252 (0%)

pfam00455, DeoR, Bacterial regulatory proteins, deoR family.
CD-Length = 228 residues, 100.0% aligned
Score =  239 bits (612), Expect = 4e-64
Identities = 103/228 (45%), Positives = 147/228 (64%), Gaps = 3/228 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6645




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31959




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3321_cdd.html


    		




 
URL:

















    ReferenceID:34159




  
Author/Investigator(s):
        Schweizer HP, Po C.





  
Title:
        Regulation of glycerol metabolism in Pseudomonas aeruginosa: characterization of the glpR repressor gene.




  
PubMed:
        8752340


MedLine:
        




    
Source:
J Bacteriol. 1996 Sep;178(17):5215-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8752340









           
Homologs By Global Alignment 

           

       



     
Gene ID:3321
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5323
                           PA3583_tr
                           translation of PA3583
                           251
                           99.99
                           99.99
                           0
                           1239.0
     

     
     
148906
                           gb|AAG06971.1|AE004779_3
                           (AE004779) glycerol-3-phosphate regulon repressor [Pseudomonas aeruginosa PAO1]
                           251
                           99.99
                           99.99
                           0
                           1239.0
     

     
     
148907
                           gb|AAB57805.1|
                           (U49666) Glp repressor [Pseudomonas aeruginosa]
                           251
                           99.60
                           99.60
                           0
                           1235.0
     

     
     
148909
                           gb|AAN66699.1|AE016298_3
                           (AE016778) glycerol-3-phosphate regulon repressor [Pseudomonas putida KT2440]
                           251
                           80.07
                           90.43
                           0
                           1016.0
     

     
     
148908
                           gb|AAO57625.1|
                           (AE016871) glycerol-3-phosphate regulon repressor [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           78.88
                           90.83
                           0
                           1032.0
     

     






      

          
GC ORFID: 46323How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3583Glimmer Score: 

          
Start: 3411334Stop: 3412089

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3583 translation of PA3583Homolog Bit Score 481.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6127 (ORF: BLASTX 400.0), t_PA3583 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGCCCCCCCGACAGCAAAGCATCATCGAGGAGGTCCGCGAGCGCGGTTACCTGAGCATCGAGGAG 
ATGGCGCAGATGTTCGCGGTCACCCCGCAGACCATCCGCCGCGACATCAACCAGCTCGCCGAACAGGGACTG 
CTGCGCCGCTACCACGGCGGTGCGGCCTACGATTCGAGCATCGAGAACACCGCCTACACCATGCGCGCCGAC 
CAGATGCGCGACGAGAAGCAGCGCATCGCCGAAGCCGTGGCCAGCCTGGTGCCGGACAACGCCTCGCTGTTC 
ATCAACATCGGCACCACCACCGAGGCCATCGCCCGCGCCCTGCTCAACCACCGTAACCTGAAGATCATCACC 
AACAACCTGCACGTGGCCGCCACCCTCAGCGCCAAGGAAGACTTCGAAGTGCTGGTCGCCGGCGGCACCGTA 
CGCAGCGACGGCGGCATCGTCGGCCAGGCCGCGGTGGACTTCATCCAGCAGTTCCGCGTCGACTTCGCCCTG 
GTCGGCATCAGCGGCATCGACGAGGATGGCAGCCTGCTCGACTTCGACTACCAGGAAGTGCGCGTATCCCAG 
GCGATCATCGACAACGCGCGGCAAGTGTTCCTGGCCGCCGACTCGAGCAAGTTCGGGCGCAACGCGGTGGTC 
CGCCTGGGACCGATCTCGCTGGTCAACCGGGTCATCAGCGACAGCCCGCCGCCCGCCGCCATCGCCCGCCTG 
ATGGCACAGCACAAGGTTCACCTGGACCTGGTCTGA