ViewGene

Locus Name:
GeneID:
Location:

GeneID:332
TrivialName: PA14_62630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62630
PAO1 Ortholog Locus:PA4733
Sequence Length:1938
Protein Length:645
Start: 5587464
Stop: 5589401
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08119.1|AE004887_3 (AE004887) acetyl-coenzyme A synthetase [Pseudomonas aeruginosa PAO1]
Identities = 643/645 (99%), Positives = 644/645 (99%)
Sequence:
ATGTTCGAGATCAGCGTCCACCCGGTGCCGGACGCCGTCCGCCAGCGTGCCTACCTGAACGACGACGACTAC
CAGCGCCTGTACCGCCAATCCGTCGAGAACCCCGACGAGTTCTGGAGCGAGCAGGCCAAGGCCTTCCTCGAT
TGGTTCAAGCCCTGGCACAGCGTCCACCACGGCGACCTGAGGAAAGGCCAGGCCACCTGGTTCAAGGGCGGC
CAGTTGAACGTCGCCTACAACTGCATCGACCGCCACCTGGAACGCCGCGGCGAACAGATCGCGATCGTCTGG
GAAGGCGACAACCCCAGCGAATCCGCGCACATCACCTACCGCAAGCTGCACCACAACGTCTGCCGCCTGGCT
AACGTGCTGAAGAGCCGCGGCGTGGAAAAGGGCGACCGGGTCTGCATCTACATGCCGATGATTCCCGAGGCC
GCCTACGCCATGCTCGCCTGCGCCCGCATCGGGGCGGTGCACTCGGTGGTGTTCGGCGGCTTCTCGCCGGAC
TCGCTGCGCGACCGCATTCTCGATGCCGACTGCCGCACCGTGATCACCGCCGACGAGGGCGTGCGCGGCGGC
AAGTACATCCCGCTGAAGCAGAATGTGGAAAAGGCGCTGAAGGACTGCCCGGACGTCTCCACCGTGGTGGTA
GTCGAGCGCACCCAGGGCGACATACCCTGGGTCGAAGGCCGCGACATCTGGTACCACGAGGCGCTCCACGCG
GCCTCAGCCGACTGCCCGGCGGAAGCGATGGACGCCGAGGACCCGCTGTTCATCCTCTATACCTCCGGCAGC
ACCGGCAAGCCGAAGGGCGTATTGCACACCACCGGGGGCTACCTGCTCGGCGCGGCGATGACCCACAAGTAC
GTGTTCGACTACCACGATGGCGACGTCTACTGGTGCACCGCCGACGTCGGCTGGGTCACCGGACACAGCTAT
ATCGTCTACGGCCCGCTGGCCAACGGCGCCACCACCCTCATGTTCGAGGGCGTGCCCAACTACCCGGACGCC
TCGCGCTTCTGGCAGGTGATCGACAAGCACCAGGTGAATATCTTCTACACCGCGCCGACCGCGATCCGCGCG
CTGATGCGCGAAGGCGACGCCCCGGTCCGCCAGACCTCGCGCAGCAGCCTGCGCCTGCTCGGCTCGGTGGGC
GAGCCGATCAACCCGGAGGCCTGGGAGTGGTACTACCAGGTGGTCGGCGAGAAGCGCTGCCCCATCGTCGAT
ACCTGGTGGCAGACTGAGACCGGCAGCATCCTGATCACCCCGTTGCCCGGCGCCACTGCGCTAAAGCCAGGC
TCGGCGACCCGCCCGTTCTTCGGCGTGCAACCCGTGCTGCTCGACGAGAAAGGCAAGGAAATCGACGGCGCG
GGCAGCGGCGTACTGGCGATCAAGGCCAGTTGGCCGAGTCAGATCCGCAGCGTCTACGGCGACCACCAGCGG
ATGATCGACACCTACTTCAAGCCCTACCCCGGGTATTACTTCAGCGGCGACGGCGCGCGCCGCGACGAGGAC
GGCTACTACTGGATCACCGGCCGGGTCGACGACGTGATCAATGTCTCCGGACACCGGATCGGCACCGCCGAG
GTCGAGAGCGCGCTGGTCCTGCACGATGCGGTGGCCGAGGCGGCAGTGGTCGGCTGCCCGCATGACGTGAAG
GGCCAGGCCATCTACGCGTTCGTCACCCTGATGGCCGGCAGTCAGCCCAGCGAGGCGCTACAACAGGAATTG
CTGGCCCTGGTCGGCAAGGAGATCGGCAGCTTCGCCAAGCCGGATCACCTGCAATGGGCGCCCAGCCTGCCG
AAGACCCGCTCCGGCAAGATCATGCGGCGTATCCTGCGCAAGATCGCCTGCAACGAGCTGGACAGTCTCGGC
GATACCTCGACCCTGGCCGATCCGGGAGTGGTGCAGGGGTTGATCGACAACCGCCTCAACCGCTGA
Translation:
MFEISVHPVPDAVRQRAYLNDDDYQRLYRQSVENPDEFWSEQAKAFLDWFKPWHSVHHGDLRKGQATWFKGG
QLNVAYNCIDRHLERRGEQIAIVWEGDNPSESAHITYRKLHHNVCRLANVLKSRGVEKGDRVCIYMPMIPEA
AYAMLACARIGAVHSVVFGGFSPDSLRDRILDADCRTVITADEGVRGGKYIPLKQNVEKALKDCPDVSTVVV
VERTQGDIPWVEGRDIWYHEALHAASADCPAEAMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGAAMTHKY
VFDYHDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDASRFWQVIDKHQVNIFYTAPTAIRA
LMREGDAPVRQTSRSSLRLLGSVGEPINPEAWEWYYQVVGEKRCPIVDTWWQTETGSILITPLPGATALKPG
SATRPFFGVQPVLLDEKGKEIDGAGSGVLAIKASWPSQIRSVYGDHQRMIDTYFKPYPGYYFSGDGARRDED
GYYWITGRVDDVINVSGHRIGTAEVESALVLHDAVAEAAVVGCPHDVKGQAIYAFVTLMAGSQPSEALQQEL
LALVGKEIGSFAKPDHLQWAPSLPKTRSGKIMRRILRKIACNELDSLGDTSTLADPGVVQGLIDNRLNR*
AnnotationID:342GeneID:332
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 06:06:17
Gene Name:acsB
Confidence Code:2
GeneProduct:acetyl-coenzyme A synthetase
Cell Localization:()
Synonyms:acs
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0365,pfam00501,COG0318
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:6.2.1.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70275.1|AE016668_1 (AE016791) acetyl-CoA synthetase [Pseudomonas putida KT2440]
          Length = 644

 Score = 1066 bits (2756), Expect = 0.0
 Identities = 506/645 (78%), Positives = 562/645 (87%), Gaps = 1/645 (0%)

>dbj|BAB50829.1| (AP003003) acetyl-CoA synthase [Mesorhizobium loti]
          Length = 651

 Score =  917 bits (2370), Expect = 0.0
 Identities = 438/650 (67%), Positives = 518/650 (79%), Gaps = 6/650 (0%)

>emb|CAC89114.1| (AJ414141) acetyl-coenzyme A synthetase [Yersinia pestis CO92]
          Length = 652

 Score =  885 bits (2287), Expect = 0.0
 Identities = 416/646 (64%), Positives = 503/646 (77%), Gaps = 5/646 (0%)

Structural Features:
COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 
[Lipid metabolism]
CD-Length = 528 residues,  99.4% aligned
Score =  684 bits (1766), Expect = 0.0
Identities = 246/556 (44%), Positives = 332/556 (59%), Gaps = 32/556 (5%)

pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues, 100.0% aligned
Score =  338 bits (868), Expect = 1e-93
Identities = 142/437 (32%), Positives = 208/437 (47%), Gaps = 25/437 (5%)

COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 534 residues,  94.9% aligned
Score =  287 bits (734), Expect = 4e-78
Identities = 159/535 (29%), Positives = 244/535 (45%), Gaps = 29/535 (5%)
Genomic Context:
Comment:
ReferenceID:667
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17809
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37655
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:332_cdd.html
URL:
ReferenceID:37733
Author/Investigator(s): Kumari S, Tishel R, Eisenbach M, Wolfe AJ.
Title: Cloning, characterization, and functional expression of acs, the gene which encodes acetyl coenzyme A synthetase in Escherichia coli.
PubMed: 7751300
MedLine:
Source:
J Bacteriol. 1995 May;177(10):2878-86.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7751300
Homologs By Global Alignment
Gene ID:332

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
549 PA4733_tr translation of PA4733 645 99.68 99.84 0 3462.0
26942 gb|AAG08119.1|AE004887_3 (AE004887) acetyl-coenzyme A synthetase [Pseudomonas aeruginosa PAO1] 645 99.68 99.84 0 3462.0
26943 gb|AAN70275.1|AE016668_1 (AE016791) acetyl-CoA synthetase [Pseudomonas putida KT2440] 645 78.44 87.13 1 2758.0
26944 dbj|BAB50829.1| (AP003003) acetyl-CoA synthase [Mesorhizobium loti] 652 67.17 79.44 8 2377.0
26945 emb|CAE25655.1| (BX572593) acetyl-CoA synthetase [Rhodopseudomonas palustris] 652 66.87 79.75 9 2361.0
GC ORFID: 43334How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4733Glimmer Score:
Start: 4851144Stop: 4853081
Length: 1938
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4733 translation of PA4733Homolog Bit Score 1338.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7807 (ORF: BLASTX 870.0), t_PA0887 (ORF: BLASTX 860.0), t_PA3568 (ORF: BLASTX 441.0), t_PA4733 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCGAGATCAGCGTCCACCCGGTGCCGGACGCCGTCCGCCAGCGTGCCTACCTGAACGACGACGACTAC
CAGCGCCTGTACCGCCAATCCGTCGAGAACCCCGACGAGTTCTGGAGCGAGCAGGCCAAGGCCTTCCTCGAT
TGGTTCAAGCCCTGGCACAGCGTCCACCACGGCGACCTGAGGAAAGGCCAGGCCACCTGGTTCAAGGGCGGC
CAGTTGAACGTCGCCTACAACTGCATCGACCGCCACCTGGAACGCCGCGGCGAACAGATCGCGATCGTCTGG
GAAGGCGACAACCCCAGCGAATCCGCGCACATCACCTACCGCAAGCTGCACCACAACGTCTGCCGCCTGGCT
AACGTGCTGAAGAGCCGCGGCGTGGAAAAGGGCGACCGGGTCTGCATCTACATGCCGATGATTCCCGAGGCC
GCCTACGCCATGCTCGCCTGCGCCCGCATCGGGGCGGTGCACTCGGTGGTGTTCGGCGGCTTCTCGCCGGAC
TCGCTGCGCGACCGCATTCTCGATGCCGACTGCCGCACCGTGATCACCGCCGACGAGGGCGTGCGCGGCGGC
AAGTACATCCCGCTGAAGCAGAATGTGGAAAAGGCGCTGAAGGACTGCCCGGACGTCTCCACCGTGGTGGTA
GTCGAGCGCACCCAGGGCGACATACCCTGGGTCGAAGGCCGCGACATCTGGTACCACGAGGCGCTCCACGCG
GCCTCAGCCGACTGCCCGGCGGAAGCGATGGACGCCGAGGACCCGCTGTTCATCCTCTATACCTCCGGCAGC
ACCGGCAAGCCGAAGGGCGTATTGCACACCACCGGGGGCTACCTGCTCGGCGCGGCGATGACCCACAAGTAC
GTGTTCGACTACCACGATGGCGACGTCTACTGGTGCACCGCCGACGTCGGCTGGGTCACCGGACACAGCTAT
ATCGTCTACGGCCCGCTGGCCAACGGCGCCACCACCCTCATGTTCGAGGGCGTGCCCAACTACCCGGACGCC
TCGCGCTTCTGGCAGGTGATCGACAAGCACCAGGTGAATATCTTCTACACCGCGCCGACCGCGATCCGCGCG
CTGATGCGCGAAGGCGACGCCCCGGTCCGCCAGACCTCGCGCAGCAGCCTGCGCCTGCTCGGCTCGGTGGGC
GAGCCGATCAACCCGGAGGCCTGGGAGTGGTACTACCAGGTGGTCGGCGAGAAGCGCTGCCCCATCGTCGAT
ACCTGGTGGCAGACTGAGACCGGCAGCATCCTGATCACCCCGTTGCCCGGCGCCACTGCGCTAAAGCCAGGC
TCGGCGACCCGCCCGTTCTTCGGCGTGCAACCCGTGCTGCTCGACGAGAAAGGCAAGGAAATCGACGGCGCG
GGCAGCGGCGTACTGGCGATCAAGGCCAGTTGGCCGAGTCAGATCCGCAGCGTCTACGGCGACCACCAGCGG
ATGATCGACACCTACTTCAAGCCCTACCCCGGGTATTACTTCAGCGGCGACGGCGCGCGCCGCGACGAGGAC
GGCTACTACTGGATCACCGGCCGGGTCGACGACGTGATCAATGTCTCCGGACACCGGATCGGCACCGCCGAG
GTCGAGAGCGCGCTGGTCCTGCACGATGCGGTGGCCGAGGCGGCAGTGGTCGGCTGCCCGCATGACGTGAAG
GGCCAGGCCATCTACGCGTTCGTCACCCTGATGGCCGGCAGTCAGCCCAGCGAGGCGCTACAACAGGAATTG
CTGGCCCTGGTCGGCAAGGAGATCGGCAGCTTCGCCAAGCCGGATCACCTGCAATGGGCGCCCAGCCTGCCG
AAGACCCGCTCCGGCAAGATCATGCGGCGTATCCTGCGCAAGATCGCCTGCAACGAGCTGGACAGTCTCGGC
GATACCTCGACCCTGGCCGATCCGGGAGTGGTGCAGGGGTTGATCGACAACCGCCTCAACCGCTGA