ViewGene
Locus Name:
GeneID:
Location:

GeneID:3318
TrivialName: PA14_26610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26610
PAO1 Ortholog Locus:PA2895
Sequence Length:723
Protein Length:240
Start: 2318660
Stop: 2319382
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06283.1|AE004716_1 (AE004716) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 236/240 (98%), Positives = 237/240 (98%)
Sequence:
ATGCTGGCGCATTTCCGcgCCCACGCGCCGCAGCAGCCGgcgCCGGCGCTGGACCAGgcGATCCTcgCCGCC
gCGCGACGCCAGgcggcgCATGTCgAACCCGCCCGGTCCTGGTGGCGGCGCTGGCTGGAAGCCTCCCGCAGG
CCGCGTTGGCAGGCGGCCTTCGCCAGCCTGCTGGGCGTGGCGCTGGTGCTGGGGCTGGTCAGCCACAACGTG
CTGGACGACGCCGAGCGCCAGGCCCGGCCCGAAGTGGCGTTCAGCGATGTGCCCCTGCGCGACGGAGTCGCC
GGGGCCGCTGCGGCGAAGCGGGCCATGCGCGCGCCGGCGGCGCCGGCTCCGCTGTCCAGCGAGATGTCGGAG
TCCCCGGCCTTGCTGGCCAGCTACGCATCGTCCGGGGAGGCGCCGCAACTGATGGCCGAGGCCGCGCCGCCG
GCTCCGGCTGCCCTGGCCGACCGACCGCCGGCCCAGGCCGCGCAGCAGGCGAAGGTCCAGGCGGAGCTGGCT
GGCGACTTCGTCGCCCAGGCCAGGGGCAAGGCGGTTGCGGTGAAGCCGGAGGTGCTCGACGAGGCGCTCGGG
GCGGTCCTTGCCCTGCGTGAGCAGGGCAAGACGGAGCAGGCCGCGACCCAGTTGGCCGAGCTGCAGAAACGT
TTCCCCGGAGAGAACCTGGTGGAACGACTGGAACGCCTCGCGACGATAGCCGCGAGCGCCAAGAAACGGCCG
TGA
Translation:
MLAHFRAHAPQQPAPALDQAILAAARRQAAHVEPARSWWRRWLEASRRPRWQAAFASLLGVALVLGLVSHNV
LDDAERQARPEVAFSDVPLRDGVAGAAAAKRAMRAPAAPAPLSSEMSESPALLASYASSGEAPQLMAEAAPP
APAALADRPPAQAAQQAKVQAELAGDFVAQARGKAVAVKPEVLDEALGAVLALREQGKTEQAATQLAELQKR
FPGENLVERLERLATIAASAKKRP*
AnnotationID:3326GeneID:3318
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2895
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6639




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23781




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36140




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3318_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3318
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5318
                           PA2895_tr
                           translation of PA2895
                           254
                           92.91
                           93.30
                           14
                           1168.0
     

     
     
148865
                           gb|AAG06283.1|AE004716_1
                           (AE004716) hypothetical protein PA2895 [Pseudomonas aeruginosa PAO1]
                           254
                           92.91
                           93.30
                           14
                           1168.0
     

     






      

          
GC ORFID: 46320How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2895Glimmer Score: 

          
Start: 2635266Stop: 2634544

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2895 translation of PA2895Homolog Bit Score 481.0

          
Other Homologs:  t_PA2895 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGCGCATTTCCGcgCCCACGCGCCGCAGCAGCCGgcgCCGGCGCTGGACCAGgcGATCCTcgCCGCC 
gCGCGACGCCAGgcggcgCATGTCgAACCCGCCCGGTCCTGGTGGCGGCGCTGGCTGGAAGCCTCCCGCAGG 
CCGCGTTGGCAGGCGGCCTTCGCCAGCCTGCTGGGCGTGGCGCTGGTGCTGGGGCTGGTCAGCCACAACGTG 
CTGGACGACGCCGAGCGCCAGGCCCGGCCCGAAGTGGCGTTCAGCGATGTGCCCCTGCGCGACGGAGTCGCC 
GGGGCCGCTGCGGCGAAGCGGGCCATGCGCGCGCCGGCGGCGCCGGCTCCGCTGTCCAGCGAGATGTCGGAG 
TCCCCGGCCTTGCTGGCCAGCTACGCATCGTCCGGGGAGGCGCCGCAACTGATGGCCGAGGCCGCGCCGCCG 
GCTCCGGCTGCCCTGGCCGACCGACCGCCGGCCCAGGCCGCGCAGCAGGCGAAGGTCCAGGCGGAGCTGGCT 
GGCGACTTCGTCGCCCAGGCCAGGGGCAAGGCGGTTGCGGTGAAGCCGGAGGTGCTCGACGAGGCGCTCGGG 
GCGGTCCTTGCCCTGCGTGAGCAGGGCAAGACGGAGCAGGCCGCGACCCAGTTGGCCGAGCTGCAGAAACGT 
TTCCCCGGAGAGAACCTGGTGGAACGACTGGAACGCCTCGCGACGATAGCCGCGAGCGCCAAGAAACGGCCG 
TGA