ViewGene
Locus Name:
GeneID:
Location:

GeneID:3317
TrivialName: PA14_42130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42130
PAO1 Ortholog Locus:PA1733
Sequence Length:732
Protein Length:243
Start: 3758955
Stop: 3758224
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05122.1|AE004599_7 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 240/243 (98%), Positives = 242/243 (99%)
Sequence:
ATGACCTACTGTGTCGCGATGCACCTGGCCGACGGCTTGGTGTTCGCCTCCGATTCGCGGACCAACGCCGGG
ATCGACCATATCGCCACCTTCCGCAAGCTGTTCACCTTCGGCACGCCCGGAGAGCGCCTGCTGGTGGTGCAG
ACGGCCGGCAACCTGGCGACCTCGCAATCGGTGATCAACCTGCTGCAGCAGCGCATCCGCCGGGACGGCGCC
AGCCTGCTCAACGTGCCCTCGGTCTACGACGCCACGGCGCTGATCGCCGAGACCACCCGCGAGGTGATGGCC
CGCGACGGCGGCAATCTGGCCGGCAATACCGACCTGAGCTGCTCCTTCCTGGTCGGCGGGCAGATCGCCGGC
GGACCGCCGGCGCTGTACAGCATCTACCCCCAGGGCAACTTCATCCAGGCCACGCCGGACACGCCTTTCCTG
CAACTGGGCGAAAGCAAGTACGGCAAGCCGATCCTCGACCGCAACCTGACTTTCGACACGCCGCTGGAGCAG
GCCCTGCGCTGCGCGCTGGTGTCGTTCGACTCGACCATCCGCAGCAACCTCTCGGTGGGCATGCCGCTGGAC
CTGCTGGTCTACCACCGCGACAGCCTGATCCTGCCGGAGGGCTACCGGGTCACCGAGGACGACGCCTATTTC
AGCGCCATCCGCCGCCAGTGGAGCGCCGGCCTGCACGACTTGCTGGAGCGCCTGCCGTCGCCGCCCTCGGCG
TACAACATCTGA
Translation:
MTYCVAMHLADGLVFASDSRTNAGIDHIATFRKLFTFGTPGERLLVVQTAGNLATSQSVINLLQQRIRRDGA
SLLNVPSVYDATALIAETTREVMARDGGNLAGNTDLSCSFLVGGQIAGGPPALYSIYPQGNFIQATPDTPFL
QLGESKYGKPILDRNLTFDTPLEQALRCALVSFDSTIRSNLSVGMPLDLLVYHRDSLILPEGYRVTEDDAYF
SAIRRQWSAGLHDLLERLPSPPSAYNI*
AnnotationID:3325GeneID:3317
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative proteasome-type protease
Cell Localization:()
Synonyms:PA1733
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3484
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3484, COG3484, Predicted proteasome-type protease 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 255 residues,  96.1% aligned
Score =  397 bits (1022), Expect = 5e-112
Identities = 153/245 (62%), Positives = 189/245 (77%), Gaps = 2/245 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23779




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37117




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3317_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3317
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5317
                           PA1733_tr
                           translation of PA1733
                           243
                           98.76
                           99.58
                           0
                           1237.0
     

     
     
148855
                           gb|AAG05122.1|AE004599_7
                           (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           243
                           98.76
                           99.58
                           0
                           1237.0
     

     
     
148856
                           gb|AAN68293.1|AE016463_7
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           243
                           69.13
                           79.42
                           3
                           870.0
     

     
     
148858
                           dbj|BAC88540.1|
                           (AP006570) gll0599 [Gloeobacter violaceus PCC 7421]
                           249
                           45.38
                           65.46
                           6
                           580.0
     

     
     
148861
                           dbj|BAB48250.1|
                           (AP002995) hypothetical protein [Mesorhizobium loti]
                           248
                           45.16
                           64.51
                           10
                           560.0
     

     






      

          
GC ORFID: 46319How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1733Glimmer Score: 

          
Start: 1194954Stop: 1195685

          
Length: 732


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1733 translation of PA1733Homolog Bit Score 481.0

          
Other Homologs:  t_PA1733 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTACTGTGTCGCGATGCACCTGGCCGACGGCTTGGTGTTCGCCTCCGATTCGCGGACCAACGCCGGG 
ATCGACCATATCGCCACCTTCCGCAAGCTGTTCACCTTCGGCACGCCCGGAGAGCGCCTGCTGGTGGTGCAG 
ACGGCCGGCAACCTGGCGACCTCGCAATCGGTGATCAACCTGCTGCAGCAGCGCATCCGCCGGGACGGCGCC 
AGCCTGCTCAACGTGCCCTCGGTCTACGACGCCACGGCGCTGATCGCCGAGACCACCCGCGAGGTGATGGCC 
CGCGACGGCGGCAATCTGGCCGGCAATACCGACCTGAGCTGCTCCTTCCTGGTCGGCGGGCAGATCGCCGGC 
GGACCGCCGGCGCTGTACAGCATCTACCCCCAGGGCAACTTCATCCAGGCCACGCCGGACACGCCTTTCCTG 
CAACTGGGCGAAAGCAAGTACGGCAAGCCGATCCTCGACCGCAACCTGACTTTCGACACGCCGCTGGAGCAG 
GCCCTGCGCTGCGCGCTGGTGTCGTTCGACTCGACCATCCGCAGCAACCTCTCGGTGGGCATGCCGCTGGAC 
CTGCTGGTCTACCACCGCGACAGCCTGATCCTGCCGGAGGGCTACCGGGTCACCGAGGACGACGCCTATTTC 
AGCGCCATCCGCCGCCAGTGGAGCGCCGGCCTGCACGACTTGCTGGAGCGCCTGCCGTCGCCGCCCTCGGCG 
TACAACATCTGA