ViewGene
Locus Name:
GeneID:
Location:

GeneID:3316
TrivialName: PA14_45770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45770
PAO1 Ortholog Locus:PA1446
Sequence Length:768
Protein Length:255
Start: 4069754
Stop: 4068987
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04835.1|AE004574_6 (AE004574) flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGACTCCGCGCATCTCCCTGGCCGGCGCGCTCGCCGCGCTCTGCCTCCTGCTGCTGGCGCCGTGGCCGGCG
CTGGCCGCCGACCCGACATCGATCTCGGCGATCACCGTGACCACCAACGGCCAGGGCCAGCAGGAGTATTCG
GTCAGCCTGCAGATCCTGCTGATCATGACCGCGCTGAGCTTCATCCCGGCGTTCGTCATGCTGATGACCAGC
TTCACCCGGATCATCATCGTCTTCTCCATCCTGCGCCAGGCGCTGGGCCTGCAATCGACGCCGTCGAACCAG
GTGCTGGTGGGGCTGGCGCTGTTCCTGACCATGTTCGTCATGGCCCCGGTGTTCGACAAGATCAACAGCCAG
GCCCTGCAGCCCTACCTGAACGAGCAGATTCCCGCCCAGGAAGCCCTGCAAAAGGCCGAGGTACCGCTGAAG
GCGTTCATGCTGGCGCAGACTCGCACCTCCGACCTGGAGCTGTTCGTGCGCCTGTCCAAGCGCACCGACATC
GGCAGCCCGGAGGCGACGCCGCTGACCATCCTGGTCCCGGCCTTCGTCACGTCCGAGCTGAAGACCGCGTTC
CAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTGTCCAGCGTGCTGATGGCGATG
GGCATGATGATGCTGTCGCCGCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTCCTGGTGGATGGC
TGGGCGCTGATCATCGGGACGCTGGCGGGCAGTTTCGGCACCGTCTAG
Translation:
MTPRISLAGALAALCLLLLAPWPALAADPTSISAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTS
FTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLK
AFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAM
GMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFGTV*
AnnotationID:3324GeneID:3316
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 10:10:11
Gene Name:fliP
Confidence Code:2
GeneProduct:flagellar biosynthetic protein FliP
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1338,pfam00813
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55490.1| (AE016862) flagellar biosynthetic protein FliP [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 250

 Score =  383 bits (983), Expect = e-106
 Identities = 204/249 (81%), Positives = 223/249 (89%), Gaps = 2/249 (0%)

>gb|AAN69933.1|AE016632_4 (AE016790) flagellar biosynthetic protein FliP [Pseudomonas putida
           KT2440]
          Length = 251

 Score =  375 bits (962), Expect = e-103
 Identities = 199/245 (81%), Positives = 217/245 (88%), Gaps = 1/245 (0%)

>gb|AAC75015.1| (AE000287) flagellar biosynthesis [Escherichia coli K12]
          Length = 245

 Score =  264 bits (675), Expect = 3e-70
 Identities = 140/240 (58%), Positives = 175/240 (72%), Gaps = 3/240 (1%)






 
Structural Features:
COG1338, FliP, Flagellar biosynthesis pathway, component FliP 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 248 residues,  99.6% aligned
Score =  277 bits (711), Expect = 7e-76
Identities = 133/252 (52%), Positives = 177/252 (70%), Gaps = 5/252 (1%)

pfam00813, FliP, FliP family.
CD-Length = 200 residues, 100.0% aligned
Score =  210 bits (535), Expect = 2e-55
Identities = 110/200 (55%), Positives = 146/200 (73%), Gaps = 6/200 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6635




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23777




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37384




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3316_cdd.html


    		




 
URL:

















    ReferenceID:37975




  
Author/Investigator(s):
        Malakooti J, Ely B, Matsumura P.





  
Title:
        Molecular characterization, nucleotide sequence, and expression of the fliO, fliP, fliQ, and fliR genes of Escherichia coli.




  
PubMed:
        8282695


MedLine:
        




    
Source:
J Bacteriol. 1994 Jan;176(1):189-97.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8282695

















    ReferenceID:37978




  
Author/Investigator(s):
        Ohnishi K, Fan F, Schoenhals GJ, Kihara M, Macnab RM.





  
Title:
        The FliO, FliP, FliQ, and FliR proteins of Salmonella typhimurium: putative components for flagellar assembly.




  
PubMed:
        9324257


MedLine:
        




    
Source:
J Bacteriol. 1997 Oct;179(19):6092-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9324257









           
Homologs By Global Alignment 

           

       



     
Gene ID:3316
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5316
                           PA1446_tr
                           translation of PA1446
                           255
                           99.99
                           99.99
                           0
                           1237.0
     

     
     
148724
                           gb|AAG04835.1|AE004574_6
                           (AE004574) flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1]
                           255
                           99.99
                           99.99
                           0
                           1237.0
     

     
     
148725
                           gb|AAO55490.1|
                           (AE016862) flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato str. DC3000]
                           258
                           79.45
                           86.82
                           11
                           986.0
     

     
     
148726
                           gb|AAD01927.2|
                           (AF031418) FliP [Pseudomonas putida]
                           258
                           77.90
                           85.65
                           10
                           966.0
     

     
     
148727
                           gb|AAN69933.1|AE016632_4
                           (AE016790) flagellar biosynthetic protein FliP [Pseudomonas putida KT2440]
                           258
                           77.90
                           85.65
                           10
                           966.0
     

     






      

          
GC ORFID: 46318How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1446Glimmer Score: 

          
Start: 884155Stop: 884922

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1446 translation of PA1446Homolog Bit Score 481.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7931 (ORF: BLASTX 380.0), t_PA1446 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCCGCGCATCTCCCTGGCCGGCGCGCTCGCCGCGCTCTGCCTCCTGCTGCTGGCGCCGTGGCCGGCG 
CTGGCCGCCGACCCGACATCGATCTCGGCGATCACCGTGACCACCAACGGCCAGGGCCAGCAGGAGTATTCG 
GTCAGCCTGCAGATCCTGCTGATCATGACCGCGCTGAGCTTCATCCCGGCGTTCGTCATGCTGATGACCAGC 
TTCACCCGGATCATCATCGTCTTCTCCATCCTGCGCCAGGCGCTGGGCCTGCAATCGACGCCGTCGAACCAG 
GTGCTGGTGGGGCTGGCGCTGTTCCTGACCATGTTCGTCATGGCCCCGGTGTTCGACAAGATCAACAGCCAG 
GCCCTGCAGCCCTACCTGAACGAGCAGATTCCCGCCCAGGAAGCCCTGCAAAAGGCCGAGGTACCGCTGAAG 
GCGTTCATGCTGGCGCAGACTCGCACCTCCGACCTGGAGCTGTTCGTGCGCCTGTCCAAGCGCACCGACATC 
GGCAGCCCGGAGGCGACGCCGCTGACCATCCTGGTCCCGGCCTTCGTCACGTCCGAGCTGAAGACCGCGTTC 
CAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTGTCCAGCGTGCTGATGGCGATG 
GGCATGATGATGCTGTCGCCGCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTCCTGGTGGATGGC 
TGGGCGCTGATCATCGGGACGCTGGCGGGCAGTTTCGGCACCGTCTAG