ViewGene
Locus Name:
GeneID:
Location:

GeneID:3315
TrivialName: PA14_49340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49340
PAO1 Ortholog Locus:PA1165
Sequence Length:729
Protein Length:242
Start: 4384093
Stop: 4384821
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04554.1|AE004546_9 (AE004546) PcpS [Pseudomonas aeruginosa PAO1]
Identities = 241/242 (99%), Positives = 241/242 (99%)
Sequence:
ATGCGCGCCATGAACGACCGTCTCCCCTCCTTCTGCACCCCGCTGGACGACCGCTGGCCGCTGCCCGTCGCG
CTGCCCGGCGTGCAACTGCGCAGCACCCGCTTCGACCCGGCGCTGCTGCAACCCGGCGACTTCGCCCTGGCC
GGCATCCAGCCGCCGGCGAACATCCTCCGCGCGGTGGCCAAGCGCCAGGCCGAGTTCCTCGCCGGGCGCCTC
TGCGCACGCGCCGCCCTGTTCGCCCTCGATGGCCGCGCCCAGACCCCGGCCGTCGGCGAGGACCGCGCACCG
GTCTGGCCGGCCGCGATCAGCGGCTCGATCACCCATGGCGACCGCTGGGCCGCCGCCCTGGTGGCGGCGCGC
GGCGACTGGCGCGGGCTCGGCCTGGACGTGGAGACCCTGCTCGAAGCCGAGCGGGCGCGCTACCTGCATGGC
GAGATCCTCACCGAAGGCGAGCGCCTGCGCTTCGCCGACGACCTGGAGCGACGCACCGGCCTGCTGGTGACC
CTGGCGTTCTCGCTGAAGGAAAGCCTGTTCAAGGCGCTCTATCCGCTGGTGGGCAAGCGCTTCTACTTCGAA
CATGCGGAACTGCTGGAATGGCGCGCCGACGGCCAGGCCCGGTTGCGCCTGCTCACCGACCTGTCGCCGGAG
TGGCGCCACGGCAGCGAGCTGGATGCCCAGTTCGCCGTGCTCGACGAACGCCTGCTCAGCCTGGTGGCGGTC
GGCGCCTGA
Translation:
MRAMNDRLPSFCTPLDDRWPLPVALPGVQLRSTRFDPALLQPGDFALAGIQPPANILRAVAKRQAEFLAGRL
CARAALFALDGRAQTPAVGEDRAPVWPAAISGSITHGDRWAAALVAARGDWRGLGLDVETLLEAERARYLHG
EILTEGERLRFADDLERRTGLLVTLAFSLKESLFKALYPLVGKRFYFEHAELLEWRADGQARLRLLTDLSPE
WRHGSELDAQFAVLDERLLSLVAVGA*
AnnotationID:3323GeneID:3315
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 16:04:09
Gene Name:pcpS
Confidence Code:1
GeneProduct:PcpS
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name: Pseudomonas aeruginosa carrier protein synthase
Functional Category Confidence Code:5
COGs: COG2977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Fatty acid biosynthesis (path 1); Pyochelin synthesis; Pyoverdine synthesis
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16982




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1165_CDS.cgi


    		




 
URL:

















    ReferenceID:23775




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3315
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5315
                           PA1165_tr
                           translation of PA1165
                           242
                           99.58
                           99.58
                           0
                           1238.0
     

     
     
148714
                           gb|AAG04554.1|AE004546_9
                           (AE004546) PcpS [Pseudomonas aeruginosa PAO1]
                           242
                           99.58
                           99.58
                           0
                           1238.0
     

     
     
148715
                           gb|AAN66807.1|AE016309_9
                           (AE016778) siderophore biosynthesis protein, putative [Pseudomonas putida KT2440]
                           243
                           60.08
                           68.72
                           11
                           691.0
     

     
     
148716
                           gb|AAO55195.1|
                           (AE016861) siderophore biosynthesis protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           54.95
                           61.98
                           28
                           642.0
     

     
     
148719
                           gb|AAK89023.1|
                           (AE008244) AGR_L_205GMp [Agrobacterium tumefaciens str. C58 (Cereon)]
                           248
                           37.90
                           52.01
                           16
                           353.0
     

     






      

          
GC ORFID: 46317How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1165Glimmer Score: 

          
Start: 569815Stop: 569087

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1165 translation of PA1165Homolog Bit Score 481.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5941 (ORF: BLASTX 276.0), t_PA1165 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCCATGAACGACCGTCTCCCCTCCTTCTGCACCCCGCTGGACGACCGCTGGCCGCTGCCCGTCGCG 
CTGCCCGGCGTGCAACTGCGCAGCACCCGCTTCGACCCGGCGCTGCTGCAACCCGGCGACTTCGCCCTGGCC 
GGCATCCAGCCGCCGGCGAACATCCTCCGCGCGGTGGCCAAGCGCCAGGCCGAGTTCCTCGCCGGGCGCCTC 
TGCGCACGCGCCGCCCTGTTCGCCCTCGATGGCCGCGCCCAGACCCCGGCCGTCGGCGAGGACCGCGCACCG 
GTCTGGCCGGCCGCGATCAGCGGCTCGATCACCCATGGCGACCGCTGGGCCGCCGCCCTGGTGGCGGCGCGC 
GGCGACTGGCGCGGGCTCGGCCTGGACGTGGAGACCCTGCTCGAAGCCGAGCGGGCGCGCTACCTGCATGGC 
GAGATCCTCACCGAAGGCGAGCGCCTGCGCTTCGCCGACGACCTGGAGCGACGCACCGGCCTGCTGGTGACC 
CTGGCGTTCTCGCTGAAGGAAAGCCTGTTCAAGGCGCTCTATCCGCTGGTGGGCAAGCGCTTCTACTTCGAA 
CATGCGGAACTGCTGGAATGGCGCGCCGACGGCCAGGCCCGGTTGCGCCTGCTCACCGACCTGTCGCCGGAG 
TGGCGCCACGGCAGCGAGCTGGATGCCCAGTTCGCCGTGCTCGACGAACGCCTGCTCAGCCTGGTGGCGGTC 
GGCGCCTGA