ViewGene
Locus Name:
GeneID:
Location:

GeneID:3314
TrivialName: PA14_06340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06340
PAO1 Ortholog Locus:PA0487
Sequence Length:759
Protein Length:252
Start: 562014
Stop: 561256
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03876.1|AE004486_5 (AE004486) probable molybdenum transport regulator [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGTCCGCACTCTCCACTCTCGCCCAGCACGTCACCCGTCGCCCGCAACGCATCGCCCTGCTCGCGCAGATC
GCCGAACTGGGCTCCATCACCCGTGCGGCGAAGGCCGTGGGCATCAGCTACAAGGGCGCCTGGGACGCCATC
GACGAACTGAACAACCTGGCCGAGCGTCCGCTGGTCGAGCGTAGCGTCGGCGGCAAGGGCGGCGGCGGCGCC
CGGCTGACTGCCGAGGGCGAACGCCTGCTGGCTCTCTACCGGCGCCTGGAAGCCTTGCAAGCGCAGGTGTTG
CAGGCCGCGGAAGACGCCGAGGACCTCAACCTGATCGGCCGCCTGATGCTCCGCACCAGCGCACGCAACCAA
TTGCACGGGCGGGTCCTGTCGATCCATGGCGAAGGCTTCCACGACCGCATCGCCATCGAGCTGCCAGGCCAG
CAACGCATCGAGGCGCTGATCACCCGCGCCAGCACCGAGCAACTCGAACTCGGTCGCGGCCGCCCGGTACTG
GCGCTGATCAAGGCCGGCTGGCTGGACGTCGGGCTGGAACCGCGCGAGGACCAGCCGAACCAGTTGCACGGC
ACCCTGGAGGAAATCCTCGCGGCCAAGGCCGGTCCCAGCGAGGTGCGCATCGCCCTGGGCAGCGGTCTTACC
CTCTGCGCGCTGCTGTCCGGCGAACGCCTGGCCAGCCTGGGGCTGAAGAAGGGCCAGAAGGTGATCGCCTCC
TTCGATCCAGCCCAGGTCCTGCTCGGCACGCCGCTGTGA
Translation:
MSALSTLAQHVTRRPQRIALLAQIAELGSITRAAKAVGISYKGAWDAIDELNNLAERPLVERSVGGKGGGGA
RLTAEGERLLALYRRLEALQAQVLQAAEDAEDLNLIGRLMLRTSARNQLHGRVLSIHGEGFHDRIAIELPGQ
QRIEALITRASTEQLELGRGRPVLALIKAGWLDVGLEPREDQPNQLHGTLEEILAAKAGPSEVRIALGSGLT
LCALLSGERLASLGLKKGQKVIASFDPAQVLLGTPL*
AnnotationID:3322GeneID:3314
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:27
Gene Name:
Confidence Code:3
GeneProduct:putative molybdenum transport regulator
Cell Localization:()
Synonyms:modR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative molybdenum transport protein ModE
Functional Category Confidence Code:5
COGs:COG2005,pfam02573
Secondary Functional Category(ies):two-component regulatory system
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65991.1|AE016228_4 (AE016775) molybdate transport regulator [Pseudomonas putida
           KT2440]
          Length = 254

 Score =  276 bits (707), Expect = 6e-74
 Identities = 148/253 (58%), Positives = 185/253 (73%), Gaps = 2/253 (0%)

>gb|AAO54036.1| (AE016857) molybdate transport regulator ModE, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 254

 Score =  264 bits (675), Expect = 3e-70
 Identities = 145/253 (57%), Positives = 183/253 (72%), Gaps = 2/253 (0%)








 
Structural Features:
COG2005, ModE, N-terminal domain of molybdenum-binding protein
CD-Length = 130 residues,  93.1% aligned
Score =  120 bits (302), Expect = 2e-28
Identities = 67/121 (55%), Positives = 72/121 (59%), Gaps = 5/121 (4%)

pfam02573, HTH_9, N-terminal HTH domain of molybdenum-binding protein. 
CD-Length = 102 residues, 100.0% aligned
Score =  109 bits (274), Expect = 3e-25
Identities = 54/102 (52%), Positives = 64/102 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6631




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23773




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33803




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3314_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3314
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5314
                           PA0487_tr
                           translation of PA0487
                           252
                           99.99
                           99.99
                           0
                           1240.0
     

     
     
148700
                           gb|AAG03876.1|AE004486_5
                           (AE004486) probable molybdenum transport regulator [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1240.0
     

     
     
148701
                           gb|AAN65991.1|AE016228_4
                           (AE016775) molybdate transport regulator [Pseudomonas putida KT2440]
                           254
                           58.26
                           72.83
                           2
                           708.0
     

     
     
148702
                           gb|AAO54036.1|
                           (AE016857) molybdate transport regulator ModE, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           57.08
                           72.04
                           2
                           676.0
     

     
     
148704
                           emb|CAE33845.1|
                           (BX640447) putative molybdenum-binding protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           276
                           44.20
                           56.88
                           32
                           467.0
     

     






      

          
GC ORFID: 46316How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0487Glimmer Score: 

          
Start: 6363356Stop: 6362598

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0487 translation of PA0487Homolog Bit Score 482.0

          
Other Homologs:  t_PA0487 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCACTCTCCACTCTCGCCCAGCACGTCACCCGTCGCCCGCAACGCATCGCCCTGCTCGCGCAGATC 
GCCGAACTGGGCTCCATCACCCGTGCGGCGAAGGCCGTGGGCATCAGCTACAAGGGCGCCTGGGACGCCATC 
GACGAACTGAACAACCTGGCCGAGCGTCCGCTGGTCGAGCGTAGCGTCGGCGGCAAGGGCGGCGGCGGCGCC 
CGGCTGACTGCCGAGGGCGAACGCCTGCTGGCTCTCTACCGGCGCCTGGAAGCCTTGCAAGCGCAGGTGTTG 
CAGGCCGCGGAAGACGCCGAGGACCTCAACCTGATCGGCCGCCTGATGCTCCGCACCAGCGCACGCAACCAA 
TTGCACGGGCGGGTCCTGTCGATCCATGGCGAAGGCTTCCACGACCGCATCGCCATCGAGCTGCCAGGCCAG 
CAACGCATCGAGGCGCTGATCACCCGCGCCAGCACCGAGCAACTCGAACTCGGTCGCGGCCGCCCGGTACTG 
GCGCTGATCAAGGCCGGCTGGCTGGACGTCGGGCTGGAACCGCGCGAGGACCAGCCGAACCAGTTGCACGGC 
ACCCTGGAGGAAATCCTCGCGGCCAAGGCCGGTCCCAGCGAGGTGCGCATCGCCCTGGGCAGCGGTCTTACC 
CTCTGCGCGCTGCTGTCCGGCGAACGCCTGGCCAGCCTGGGGCTGAAGAAGGGCCAGAAGGTGATCGCCTCC 
TTCGATCCAGCCCAGGTCCTGCTCGGCACGCCGCTGTGA