ViewGene
Locus Name:
GeneID:
Location:

GeneID:3313
TrivialName: PA14_02380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02380
PAO1 Ortholog Locus:PA0190
Sequence Length:726
Protein Length:241
Start: 213891
Stop: 214616
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03580.1|AE004457_1 (AE004457) probable acid phosphatase [Pseudomonas aeruginosa PAO1]
Identities = 240/241 (99%), Positives = 241/241 (100%)
Sequence:
ATGAACAACAAGACCCTATGCCCTTCGCTCTTGCTCTGCCTTTCGCTGCTCGCACCGCTGTCTTGTCTCGGG
GAGACCGCCGCCGCGCCCTATCCGCTGGCCCACCCACCGCGCCTGGCCGACTACCTTCCGCCGCCGCCGGCG
GCGAACTCGGCTGCGGCCGTCGCCGATCTCGGCGCGGTGCTGGAGGCGCAACGCCTGCGCACGCCCGAACAG
GTACGCCGGGTACGCGCCCACGACCAGTGGGAGGACAACGTCTTCCCCTTCGCCGGCGACCTGCTGGGCGCG
TCGTTCGACAAGGAACGCCTGCCGCTGACCCGGAGCTTCTTCAACCGCGCCCAGGAAAACCTGGTCGAGGTG
CTGATGCCGGCGAAGAAGCACTTCGCCCGCCCGCGTCCCTACGAAGTGACACCGAAGGTGAAGCCGGTGCTG
CCGCCGCCGGAGGGGGAGTCCTATCCCAGCGGCCACACCATGGACAGCTACTTCAAGGCCTCGCTGCTGAGC
ATGCTGGTGCCGGAGCATCACGATGCGTTCTTCGCTCGCGCCGAGGAGCATGCGCAGAGCCGGGTGCTGGCC
GGCGTGCACTTCCCCAGCGACCTGGAAGGCGGGCAGACCGCCGCCGCGGCGCTGGTGGCGAGCCTGCTGGCC
GATCCGGCGGTGGCCGCCGACTTTGCCGCGGTGCGCGAGGAGCTGCGCGGCGCGCTGGGGTTGCCGAAACTC
CAGTAG
Translation:
MNNKTLCPSLLLCLSLLAPLSCLGETAAAPYPLAHPPRLADYLPPPPAANSAAAVADLGAVLEAQRLRTPEQ
VRRVRAHDQWEDNVFPFAGDLLGASFDKERLPLTRSFFNRAQENLVEVLMPAKKHFARPRPYEVTPKVKPVL
PPPEGESYPSGHTMDSYFKASLLSMLVPEHHDAFFARAEEHAQSRVLAGVHFPSDLEGGQTAAAALVASLLA
DPAVAADFAAVREELRGALGLPKLQ*
AnnotationID:3321GeneID:3313
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 09:09:55
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-associated phospholipid phosphatase
Cell Localization:()
Synonyms:PA0190
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0671
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0671, PgpB, Membrane-associated phospholipid phosphatase 
[Lipid metabolism]
CD-Length = 232 residues,  95.7% aligned
Score = 62.9 bits (151), Expect = 3e-11
Identities = 49/237 (20%), Positives = 70/237 (29%), Gaps = 24/237 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23771




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33558




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3313_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3313
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5313
                           PA0190_tr
                           translation of PA0190
                           241
                           99.58
                           99.99
                           0
                           1241.0
     

     
     
148699
                           gb|AAG03580.1|AE004457_1
                           (AE004457) probable acid phosphatase [Pseudomonas aeruginosa PAO1]
                           241
                           99.58
                           99.99
                           0
                           1241.0
     

     






      

          
GC ORFID: 46315How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0190Glimmer Score: 

          
Start: 6015230Stop: 6015955

          
Length: 726


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0190 translation of PA0190Homolog Bit Score 482.0

          
Other Homologs:  t_PA0190 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAACAAGACCCTATGCCCTTCGCTCTTGCTCTGCCTTTCGCTGCTCGCACCGCTGTCTTGTCTCGGG 
GAGACCGCCGCCGCGCCCTATCCGCTGGCCCACCCACCGCGCCTGGCCGACTACCTTCCGCCGCCGCCGGCG 
GCGAACTCGGCTGCGGCCGTCGCCGATCTCGGCGCGGTGCTGGAGGCGCAACGCCTGCGCACGCCCGAACAG 
GTACGCCGGGTACGCGCCCACGACCAGTGGGAGGACAACGTCTTCCCCTTCGCCGGCGACCTGCTGGGCGCG 
TCGTTCGACAAGGAACGCCTGCCGCTGACCCGGAGCTTCTTCAACCGCGCCCAGGAAAACCTGGTCGAGGTG 
CTGATGCCGGCGAAGAAGCACTTCGCCCGCCCGCGTCCCTACGAAGTGACACCGAAGGTGAAGCCGGTGCTG 
CCGCCGCCGGAGGGGGAGTCCTATCCCAGCGGCCACACCATGGACAGCTACTTCAAGGCCTCGCTGCTGAGC 
ATGCTGGTGCCGGAGCATCACGATGCGTTCTTCGCTCGCGCCGAGGAGCATGCGCAGAGCCGGGTGCTGGCC 
GGCGTGCACTTCCCCAGCGACCTGGAAGGCGGGCAGACCGCCGCCGCGGCGCTGGTGGCGAGCCTGCTGGCC 
GATCCGGCGGTGGCCGCCGACTTTGCCGCGGTGCGCGAGGAGCTGCGCGGCGCGCTGGGGTTGCCGAAACTC 
CAGTAG