ViewGene
Locus Name:
GeneID:
Location:

GeneID:3311
TrivialName: PA14_15830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15830
PAO1 Ortholog Locus:PA3757
Sequence Length:744
Protein Length:247
Start: 1350596
Stop: 1349853
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07144.1|AE004794_9 (AE004794) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 245/247 (99%), Positives = 246/247 (99%)
Sequence:
ATGAAGACAGCCCACGACCTGCTCCTGGCCCTGCGTCCCGACGAGGCGCAACCCACCCCCCTCTATCTGCAG
CTGGCGCGCAATCTCGAGAGCGCGATCCATGCCGGCCAGTGGAAAGCGGAGGAAGCGCTGCCCTCCGAACGC
AACCTCAGCGAAACCCTGAACATTTCCCGCGTCACCGCGCGCAAGGCCCTCGAAGTACTCTTCGAGCAGGGG
CTGATCCGCCGCAACCAGGGCTCCGGCACCTTCATTACGCCGCGTCTCGAACAACCGCTGTCGCGTCTCTCC
AGCTTCAGCGAGATGCTCCGCCTGAAAGGCTTCACCCCCGGCTCCACCTGGCTGGAGCGCGGCATCGCCCTG
CCCACCCACGACGAACTGATCCGCCTCGGCCTCTCGCCGACCGAGAAGGTCGCGCGCATGAAGCGCCTGCGC
AAGGCCGACGGCACGGTGATGGCGATCGAGAACAGCACCCTGCCGGCACGCCTGCTGCCGGATCCGACGGCG
GTCGGCGATTCCCTCTACGAATACCTGGACGGCATCGGTCGCCCGGTGGTCCGCGCCCTCCAGCACGTGCGC
GCGATCAACGCCTCCGCGTCCGATGCCGCGCTGGTCGGCATCGCGCCGGGCACCGCGATGCTGCTGATGACC
CGGATCGGCTACCTCGAGGACAACACCCCGATAGAGCTGACCGACACCTACTGCCGCAACGACTACTACGAC
TTCGTCGCCGAACTGCGACGCTGA
Translation:
MKTAHDLLLALRPDEAQPTPLYLQLARNLESAIHAGQWKAEEALPSERNLSETLNISRVTARKALEVLFEQG
LIRRNQGSGTFITPRLEQPLSRLSSFSEMLRLKGFTPGSTWLERGIALPTHDELIRLGLSPTEKVARMKRLR
KADGTVMAIENSTLPARLLPDPTAVGDSLYEYLDGIGRPVVRALQHVRAINASASDAALVGIAPGTAMLLMT
RIGYLEDNTPIELTDTYCRNDYYDFVAELRR*
AnnotationID:3319GeneID:3311
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:22
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA3757
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM35600.1| (AE011701) transcriptional regulator gntR family [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 255

 Score =  267 bits (683), Expect = 4e-71
 Identities = 137/238 (57%), Positives = 170/238 (71%)

>gb|AAK22523.1| (AE005726) transcriptional regulator, GntR family [Caulobacter
           crescentus CB15]
          Length = 301

 Score =  192 bits (489), Expect = 1e-48
 Identities = 103/230 (44%), Positives = 140/230 (60%)






 
Structural Features:
COG2188, PhnF, Transcriptional regulators [Transcription]
CD-Length = 236 residues, 100.0% aligned
Score =  209 bits (533), Expect = 5e-55
Identities = 104/236 (44%), Positives = 143/236 (60%), Gaps = 4/236 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23767




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31801




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3311_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3311
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5309
                           PA3757_tr
                           translation of PA3757
                           247
                           99.19
                           99.59
                           0
                           1241.0
     

     
     
148536
                           gb|AAG07144.1|AE004794_9
                           (AE004794) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           247
                           99.19
                           99.59
                           0
                           1241.0
     

     
     
148537
                           gb|AAQ58231.1|
                           (AE016911) probable transcriptional regulator, GntR family [Chromobacterium violaceum ATCC 12472]
                           247
                           67.20
                           77.73
                           3
                           842.0
     

     
     
148538
                           gb|AAM35600.1|
                           (AE011701) transcriptional regulator gntR family [Xanthomonas axonopodis pv. citri str. 306]
                           256
                           55.07
                           68.75
                           10
                           682.0
     

     
     
148539
                           gb|AAM42684.1|
                           (AE012460) transcriptional regulator gntR family [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           260
                           53.46
                           65.76
                           18
                           666.0
     

     






      

          
GC ORFID: 46313How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3757Glimmer Score: 

          
Start: 3603341Stop: 3604084

          
Length: 744


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3757 translation of PA3757Homolog Bit Score 482.0

          
Other Homologs:  t_PA3757 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACAGCCCACGACCTGCTCCTGGCCCTGCGTCCCGACGAGGCGCAACCCACCCCCCTCTATCTGCAG 
CTGGCGCGCAATCTCGAGAGCGCGATCCATGCCGGCCAGTGGAAAGCGGAGGAAGCGCTGCCCTCCGAACGC 
AACCTCAGCGAAACCCTGAACATTTCCCGCGTCACCGCGCGCAAGGCCCTCGAAGTACTCTTCGAGCAGGGG 
CTGATCCGCCGCAACCAGGGCTCCGGCACCTTCATTACGCCGCGTCTCGAACAACCGCTGTCGCGTCTCTCC 
AGCTTCAGCGAGATGCTCCGCCTGAAAGGCTTCACCCCCGGCTCCACCTGGCTGGAGCGCGGCATCGCCCTG 
CCCACCCACGACGAACTGATCCGCCTCGGCCTCTCGCCGACCGAGAAGGTCGCGCGCATGAAGCGCCTGCGC 
AAGGCCGACGGCACGGTGATGGCGATCGAGAACAGCACCCTGCCGGCACGCCTGCTGCCGGATCCGACGGCG 
GTCGGCGATTCCCTCTACGAATACCTGGACGGCATCGGTCGCCCGGTGGTCCGCGCCCTCCAGCACGTGCGC 
GCGATCAACGCCTCCGCGTCCGATGCCGCGCTGGTCGGCATCGCGCCGGGCACCGCGATGCTGCTGATGACC 
CGGATCGGCTACCTCGAGGACAACACCCCGATAGAGCTGACCGACACCTACTGCCGCAACGACTACTACGAC 
TTCGTCGCCGAACTGCGACGCTGA