ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3310

TrivialName: PA14_39980

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39980

PAO1 Ortholog Locus: PA1898

Sequence Length: 714

Protein Length: 237

Start: 3562927

Stop: 3562214

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05287.1|AE004616_1 (AE004616) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 237/237 (100%), Positives = 237/237 (100%)

Sequence:

ATGCATGATGAGAGAGAGGGATATCTCGAGATTTTGTCAAGAATAACAACCGAGGAAGAGTTCTTCTCCCTG
GTTCTCGAGATATGCGGTAATTATGGATTCGAATTCTTTTCATTCGGTGCGCGGGCGCCTTTCCCGCTGACC
GCGCCTAAATATCATTTCTTGTCCAATTACCCAGGGGAATGGAAAAGCAGATATATCTCCGAAGACTACACA
TCCATCGACCCGATCGTGCGCCATGGTCTCCTGGAATACACCCCGCTGATCTGGAATGGCGAAGACTTCCAG
GAGAACCGTTTCTTCTGGGAGGAAGCGCTGCATCACGGCATCCGTCACGGCTGGTCGATCCCGGTCCGCGGC
AAGTACGGGCTGATCAGCATGCTGTCCCTGGTGCGTTCCAGCGAGAGCATCGCCGCTACGGAAATCCTGGAG
AAGGAATCCTTCCTGCTCTGGATCACCAGCATGCTGCAGGCTACCTTCGGCGACCTGCTGGCGCCGCGCATC
GTCCCGGAAAGCAATGTGCGCCTGACCGCCAGGGAAACCGAGATGCTCAAGTGGACCGCGGTGGGCAAGACC
TACGGCGAGATCGGCCTGATCCTGTCGATCGACCAGCGCACGGTGAAATTCCATATCGTCAATGCGATGCGC
AAGCTCAACTCCAGCAACAAGGCGGAGGCCACCATGAAGGCCTACGCCATCGGCCTGCTCAACTGA

Translation:

MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYT
SIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIAATEILE
KESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMR
KLNSSNKAEATMKAYAIGLLN*

AnnotationID:3318 GeneID:3310

AnnotatorUID: danlee

Modification Date/Time: 2004-03-24 13:01:50

Gene Name: qscR

Confidence Code: 1

GeneProduct: probable transcriptional regulator

Cell Localization: ()

Synonyms: phzR

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam03472, smart00421

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Phenazine biosynthesis

Homology:

100% identical to PA1898 of PAO1.

Structural Features:

pfam03472, Autoind_bind, Autoinducer binding domain. Score: 138, 1e-33
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon; Score: 67.1, 4e-12

Genomic Context:

Comment:

ReferenceID:6623

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23765

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31557

Author/Investigator(s): Chugani SA, Whiteley M, Lee KM, D'Argenio D, Manoil C, Greenberg EP.

Title: QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa.QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa.QscR, a modulator of quorum-sensing signal synthesis and virulence in

PubMed: 11226312

MedLine:

Source:

Reference Type: Journal

Data:

URL:

ReferenceID:31558

Author/Investigator(s): Pierson LS 3rd, Keppenne VD, Wood DW.

Title: Phenazine antibiotic biosynthesis in Pseudomonas aureofaciens 30-84 is regulated by PhzR in response to cell density.

PubMed: 8021179

MedLine:

Source:

Reference Type: Journal

Data:

URL:

ReferenceID:31560

Author/Investigator(s): Chancey ST, Wood DW, Pierson LS 3rd.

Title: Two-component transcriptional regulation of N-acyl-homoserine lactone production in Pseudomonas aureofaciens.

PubMed: 10347004

MedLine:

Source:

Reference Type: Journal

Data:

URL:

Homologs By Global Alignment

Gene ID:3310

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5308 PA1898_tr translation of PA1898 237 99.99 99.99 0 1241.0

148533 gb|AAG05287.1|AE004616_1 (AE004616) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 237 99.99 99.99 0 1241.0

148534 gb|AAF01471.1|AF190630_1 (AF190630) PhzR [Pseudomonas aeruginosa] 237 99.99 99.99 0 1241.0

148535 gb|AAK35156.1|AF296284_2 (AF296284) transcriptional activator BviR [Burkholderia cepacia] 240 44.58 60.41 6 537.0

GC ORFID: `46312`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1898`	Glimmer Score:
Start: `1390983`	Stop: `1391696`
Length: `714`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1898 translation of PA1898`	Homolog Bit Score `482.0`
Other Homologs: `t_PA1898 (ORF: GLIMMER)`
GC ORF Sequence
ATGCATGATGAGAGAGAGGGATATCTCGAGATTTTGTCAAGAATAACAACCGAGGAAGAGTTCTTCTCCCTG GTTCTCGAGATATGCGGTAATTATGGATTCGAATTCTTTTCATTCGGTGCGCGGGCGCCTTTCCCGCTGACC GCGCCTAAATATCATTTCTTGTCCAATTACCCAGGGGAATGGAAAAGCAGATATATCTCCGAAGACTACACA TCCATCGACCCGATCGTGCGCCATGGTCTCCTGGAATACACCCCGCTGATCTGGAATGGCGAAGACTTCCAG GAGAACCGTTTCTTCTGGGAGGAAGCGCTGCATCACGGCATCCGTCACGGCTGGTCGATCCCGGTCCGCGGC AAGTACGGGCTGATCAGCATGCTGTCCCTGGTGCGTTCCAGCGAGAGCATCGCCGCTACGGAAATCCTGGAG AAGGAATCCTTCCTGCTCTGGATCACCAGCATGCTGCAGGCTACCTTCGGCGACCTGCTGGCGCCGCGCATC GTCCCGGAAAGCAATGTGCGCCTGACCGCCAGGGAAACCGAGATGCTCAAGTGGACCGCGGTGGGCAAGACC TACGGCGAGATCGGCCTGATCCTGTCGATCGACCAGCGCACGGTGAAATTCCATATCGTCAATGCGATGCGC AAGCTCAACTCCAGCAACAAGGCGGAGGCCACCATGAAGGCCTACGCCATCGGCCTGCTCAACTGA