ViewGene

Locus Name:
GeneID:
Location:

GeneID: 331

TrivialName: PA14_49300

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_49300

PAO1 Ortholog Locus: PA1169

Sequence Length: 2058

Protein Length: 685

Start: 4381332

Stop: 4379275

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04558.1|AE004547_4 (AE004547) probable lipoxygenase [Pseudomonas aeruginosa PAO1] Identities = 677/685 (98%), Positives = 679/685 (99%)

Sequence:

ATGAAACGCAGGAGTGTGCTCTTGTCGGGTGTCGCCCTGAGTGGAACCGCACTGGCCAATGACTCGATATTC
TTTTCGCCCTTGAAATACCTCGGGGCGGAACAACAGCGATCTATCGATGCCTCGCGAAGTTTGCTGGACAAC
CTGATTCCGCCGAGTTTGCCGCAATATGACAACCTGGCCGGAAAGTTGGCGCGGCGTGCGGTATTGACCAGC
AAGAAACTGGTATATGTCTGGACCGAGAACTTCGCCAATGTCAAAGGCGTGCCGATGGCCCGCTCGGTGCCG
CTGGGCGAGTTGCCGAATGTCGACTGGCTGTTGAAGACCGCCGGGGTGATCGTCGAGCTGATCGTCAATTTC
GTCGCCTCGTTGCCGGCGTCGGCCGCCGCGCAGTTCGAGCGGATCGCCGCCGGGCTCAGCGGCGATCTGGAA
GCGGCGCGCCAGGTCCACGAGGCGTTGCTGGAGGAGGCGAAGAACGATCCGGCCGCGGCCGGCAGCCTGCTG
CTGCGCTTCACGGAATTGCAGACGCGGGTGATCGCCTTGCTGACGCGGGTCGGCCTGCTGGTCGACGACATC
CTCAAGAGCGCCAGCAACCTGGTTACCCAGGGTGGACAGGGCGACGGCCTGAATCGCTTCCGCGCGGTGTTC
GGCACCCTGCGCCTGCCGGAGGTCGCCGACAGCTTCCGTGACGACGAAGCGTTCGCCTACTGGCGGGTGGCC
GGGCCTAATCCGCTGCTGATCCGCCGCGTCGATGCGCTGCCGGCCAACTTTCCGCTGGGCGAAGAGCAGTTC
CGCCGGGTGATGGGCGCCGACGACAGCTTGCTGGAGGCCGCCGCCAGCCGCCGCCTGTACCTGCTGGACTAC
GCCGAGCTGGGCAAGCTGGCGCCGTCGGGAGCGGTGGACAAACTGCTCACCGGGACGGGCTTCGCCTATGCG
CCGATCGCCCTGTTCGCCCTTGGCAAGGATCGGGCGAGGCTGTTGCCGGTGGCCATCCAGTGCGGCCAGGAC
CCCGCTACCCATCCGATGTTCGTGCGTCCCGCGGAGTCGGAGAGTGATCTGTACTGGGGTTGGCAGATGGCC
AAGACGGTGGTCCAGGTCGCCGAGGAGAACTACCACGAGATGTTCGTCCACCTGGCCCAGACCCACCTGGTG
AGCGAGGCGTTCTGCCTGGCCACCCAGCGCACCCTGGCGCCCAGCCATCCGCTGCACGTCCTGCTCGCCCCG
CACTTCGAGGGCACCCTGTTCATCAACGAGGGGGCGGCGCGGATCCTGTTGCCCAGCGCGGGCTTCATCGAC
GTGATGTTCGCCGCGCCGATCCAGGACACCCAGGCCACCGCCGGCGGCAACCGGCTGGGTTTCGACTTCTAC
CGCGGCATGTTGCCGGAGAGCCTGAAGGCGCGGAACGTCGACGACCCGGCCGCGTTACCGGACTACCCCTAC
CGCGACGACGGCCTGCTGGTGTGGAATGCGATCCGCCAGTGGGCGGCCGACTACGTGGCGGTGTACTACGCC
AGCGACGGCGACGTCACCGGTGACGTCGAACTGGTGGCCTGGGTCGGCGAAGTGATCGGCAGCGGCAAGGTG
GCCGGGTTCCGCCCGATCACCGGTCGCAGCCAACTGGTCGAGGTGCTGACCATGGTGATCTTCACCGCCTCC
GCGCAGCATGCGGCGGTCAATTTTCCCCAGCCTTCGATGATGACCTACGCGCCAGCGATCTGCGCCATGAGC
GCGGCGCCGGCTCCGGACTCGCCGAGCGGCAAGAGCGAGGCCGATTGGTTGAAGATGATGCCGCCGACCCTG
GTGGCGCTGGAGAAGGTGAACATCTATCACCTGCTCGGTTCGGTCTACCACGGTCGCCTCGGCGACTACCGG
CAGACCGGGTTCCCCTATGCGCCGGTGTTCTCGGACAGGCGGGTGACCGCCAGCGGCGGCCCGCTGGAGCGC
TTCCAGGCACGCCTGAAGGAGGTCGAGGCGACCATTCGCACGCGCAACCAGGCGCGCCGCAAGCCCTACGAG
TACCTGTTGCCGAGCCGGATTCCGGCGAGCACCAATATCTGA

Translation:

MKRRSVLLSGVALSGTALANDSIFFSPLKYLGAEQQRSIDASRSLLDNLIPPSLPQYDNLAGKLARRAVLTS
KKLVYVWTENFANVKGVPMARSVPLGELPNVDWLLKTAGVIVELIVNFVASLPASAAAQFERIAAGLSGDLE
AARQVHEALLEEAKNDPAAAGSLLLRFTELQTRVIALLTRVGLLVDDILKSASNLVTQGGQGDGLNRFRAVF
GTLRLPEVADSFRDDEAFAYWRVAGPNPLLIRRVDALPANFPLGEEQFRRVMGADDSLLEAAASRRLYLLDY
AELGKLAPSGAVDKLLTGTGFAYAPIALFALGKDRARLLPVAIQCGQDPATHPMFVRPAESESDLYWGWQMA
KTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFID
VMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNVDDPAALPDYPYRDDGLLVWNAIRQWAADYVAVYYA
SDGDVTGDVELVAWVGEVIGSGKVAGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAPAICAMS
AAPAPDSPSGKSEADWLKMMPPTLVALEKVNIYHLLGSVYHGRLGDYRQTGFPYAPVFSDRRVTASGGPLER
FQARLKEVEATIRTRNQARRKPYEYLLPSRIPASTNI*

AnnotationID:341 GeneID:331

AnnotatorUID: danlee

Modification Date/Time: 2004-02-03 15:03:41

Gene Name:

Confidence Code: 3

GeneProduct: probable lipoxygenase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:665

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16973

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI Conserved Domain Search.

Reference Type: Blast (text/plain)

Data: PA1169_CDS.cgi

URL:

ReferenceID:17807

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:331

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

548 PA1169_tr translation of PA1169 685 98.83 99.12 0 3462.0

26940 gb|AAG04558.1|AE004547_4 (AE004547) probable lipoxygenase [Pseudomonas aeruginosa PAO1] 685 98.83 99.12 0 3462.0

26941 gb|AAL85880.1|AF479686_1 (AF479686) linoleate oxygen oxidoreductase [Pseudomonas aeruginosa] 685 98.54 98.83 0 3450.0

GC ORFID: `43333`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1169`	Glimmer Score:
Start: `572576`	Stop: `574633`
Length: `2058`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1169 translation of PA1169`	Homolog Bit Score `1338.0`
Other Homologs: `t_PA1169 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAACGCAGGAGTGTGCTCTTGTCGGGTGTCGCCCTGAGTGGAACCGCACTGGCCAATGACTCGATATTC TTTTCGCCCTTGAAATACCTCGGGGCGGAACAACAGCGATCTATCGATGCCTCGCGAAGTTTGCTGGACAAC CTGATTCCGCCGAGTTTGCCGCAATATGACAACCTGGCCGGAAAGTTGGCGCGGCGTGCGGTATTGACCAGC AAGAAACTGGTATATGTCTGGACCGAGAACTTCGCCAATGTCAAAGGCGTGCCGATGGCCCGCTCGGTGCCG CTGGGCGAGTTGCCGAATGTCGACTGGCTGTTGAAGACCGCCGGGGTGATCGTCGAGCTGATCGTCAATTTC GTCGCCTCGTTGCCGGCGTCGGCCGCCGCGCAGTTCGAGCGGATCGCCGCCGGGCTCAGCGGCGATCTGGAA GCGGCGCGCCAGGTCCACGAGGCGTTGCTGGAGGAGGCGAAGAACGATCCGGCCGCGGCCGGCAGCCTGCTG CTGCGCTTCACGGAATTGCAGACGCGGGTGATCGCCTTGCTGACGCGGGTCGGCCTGCTGGTCGACGACATC CTCAAGAGCGCCAGCAACCTGGTTACCCAGGGTGGACAGGGCGACGGCCTGAATCGCTTCCGCGCGGTGTTC GGCACCCTGCGCCTGCCGGAGGTCGCCGACAGCTTCCGTGACGACGAAGCGTTCGCCTACTGGCGGGTGGCC GGGCCTAATCCGCTGCTGATCCGCCGCGTCGATGCGCTGCCGGCCAACTTTCCGCTGGGCGAAGAGCAGTTC CGCCGGGTGATGGGCGCCGACGACAGCTTGCTGGAGGCCGCCGCCAGCCGCCGCCTGTACCTGCTGGACTAC GCCGAGCTGGGCAAGCTGGCGCCGTCGGGAGCGGTGGACAAACTGCTCACCGGGACGGGCTTCGCCTATGCG CCGATCGCCCTGTTCGCCCTTGGCAAGGATCGGGCGAGGCTGTTGCCGGTGGCCATCCAGTGCGGCCAGGAC CCCGCTACCCATCCGATGTTCGTGCGTCCCGCGGAGTCGGAGAGTGATCTGTACTGGGGTTGGCAGATGGCC AAGACGGTGGTCCAGGTCGCCGAGGAGAACTACCACGAGATGTTCGTCCACCTGGCCCAGACCCACCTGGTG AGCGAGGCGTTCTGCCTGGCCACCCAGCGCACCCTGGCGCCCAGCCATCCGCTGCACGTCCTGCTCGCCCCG CACTTCGAGGGCACCCTGTTCATCAACGAGGGGGCGGCGCGGATCCTGTTGCCCAGCGCGGGCTTCATCGAC GTGATGTTCGCCGCGCCGATCCAGGACACCCAGGCCACCGCCGGCGGCAACCGGCTGGGTTTCGACTTCTAC CGCGGCATGTTGCCGGAGAGCCTGAAGGCGCGGAACGTCGACGACCCGGCCGCGTTACCGGACTACCCCTAC CGCGACGACGGCCTGCTGGTGTGGAATGCGATCCGCCAGTGGGCGGCCGACTACGTGGCGGTGTACTACGCC AGCGACGGCGACGTCACCGGTGACGTCGAACTGGTGGCCTGGGTCGGCGAAGTGATCGGCAGCGGCAAGGTG GCCGGGTTCCGCCCGATCACCGGTCGCAGCCAACTGGTCGAGGTGCTGACCATGGTGATCTTCACCGCCTCC GCGCAGCATGCGGCGGTCAATTTTCCCCAGCCTTCGATGATGACCTACGCGCCAGCGATCTGCGCCATGAGC GCGGCGCCGGCTCCGGACTCGCCGAGCGGCAAGAGCGAGGCCGATTGGTTGAAGATGATGCCGCCGACCCTG GTGGCGCTGGAGAAGGTGAACATCTATCACCTGCTCGGTTCGGTCTACCACGGTCGCCTCGGCGACTACCGG CAGACCGGGTTCCCCTATGCGCCGGTGTTCTCGGACAGGCGGGTGACCGCCAGCGGCGGCCCGCTGGAGCGC TTCCAGGCACGCCTGAAGGAGGTCGAGGCGACCATTCGCACGCGCAACCAGGCGCGCCGCAAGCCCTACGAG TACCTGTTGCCGAGCCGGATTCCGGCGAGCACCAATATCTGA