ViewGene
Locus Name:
GeneID:
Location:

GeneID:3307
TrivialName: PA14_04040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04040
PAO1 Ortholog Locus:PA0309
Sequence Length:753
Protein Length:250
Start: 364986
Stop: 364234
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03698.1|AE004469_3 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/250 (99%), Positives = 250/250 (100%)
Sequence:
ATGCGCGCTTTGCTCGCCTTCGCTTTACTGCTGGTTGGTCTGCCCGCCCTGGCCGACCCTTATCAACGCCTG
TACCAGGCCGCTGGCTGGCCCGACCAGCGCGCGCATTTCAGCGATGCCCTGGACGCGGCGCAGAAGCGCTAC
CAGGACAAGCTGCCACCCGCGCTCTACCAGACCCTGGTGGACAACAGCAATCGCCGCTTCGCCCCGGCCGAA
GTCGACCAGCGCGCCCTCAACGGCCTGCGCGAGAACCTGCCGGACAGCGCCAGCCCGCTGAATTTCTTCGAG
TCGCCGCTGGGGCGCAAGGTGGTCGCCGCCGAGGTGCTCGCCACCCGCCGCGACCAGTTGCTCCAGCACAGC
AACGGCCTGCCGCGGCAGACCGCCAGCGAGCCGCGCCGGGCCCTGGTGAAGCGCCTGGCCCAGGTCCTTCCG
GCCCGAGAGGCCGGTGCGGAAGTCAGCCTGGCCCTGGCCGGGGTCGCCGCCGACAGCCTCAGCCAAATGCTT
CCGGGCCTCCCCGGCCTGCTTGGCGGCGGACAGACCGGCCAGTTGCTGGAAGGCCAGCGCCAGCGCCTGGTG
CAGCAGATCGGCGCGGACCTGGAGAACACCCTGCTGTATGTCTACCGCGATCTCTCCGACGCGGAACTCACC
CAGTACGTGAACTTCGCCGAGTCGCCGTCCGGCCGCAGCTACTACCAGGCGGCCCTGGCCGCGCTGAAAGCC
GGCCTGGCGGTGGACCAGGCGGTCGCCCCCTGA
Translation:
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAE
VDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLP
AREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELT
QYVNFAESPSGRSYYQAALAALKAGLAVDQAVAP*
AnnotationID:3315GeneID:3307
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 08:08:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0309
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6617




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23759




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3307
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5305
                           PA0309_tr
                           translation of PA0309
                           250
                           99.60
                           99.99
                           0
                           1242.0
     

     
     
148470
                           gb|AAG03698.1|AE004469_3
                           (AE004469) hypothetical protein PA0309 [Pseudomonas aeruginosa PAO1]
                           250
                           99.60
                           99.99
                           0
                           1242.0
     

     
     
148472
                           gb|AAN70725.1|AE016716_4
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           253
                           62.05
                           75.88
                           6
                           764.0
     

     
     
148471
                           gb|AAO58723.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           255
                           60.39
                           74.11
                           8
                           771.0
     

     






      

          
GC ORFID: 46309How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0309Glimmer Score: 

          
Start: 6166328Stop: 6165576

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0309 translation of PA0309Homolog Bit Score 483.0

          
Other Homologs:  t_PA0309 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCTTTGCTCGCCTTCGCTTTACTGCTGGTTGGTCTGCCCGCCCTGGCCGACCCTTATCAACGCCTG 
TACCAGGCCGCTGGCTGGCCCGACCAGCGCGCGCATTTCAGCGATGCCCTGGACGCGGCGCAGAAGCGCTAC 
CAGGACAAGCTGCCACCCGCGCTCTACCAGACCCTGGTGGACAACAGCAATCGCCGCTTCGCCCCGGCCGAA 
GTCGACCAGCGCGCCCTCAACGGCCTGCGCGAGAACCTGCCGGACAGCGCCAGCCCGCTGAATTTCTTCGAG 
TCGCCGCTGGGGCGCAAGGTGGTCGCCGCCGAGGTGCTCGCCACCCGCCGCGACCAGTTGCTCCAGCACAGC 
AACGGCCTGCCGCGGCAGACCGCCAGCGAGCCGCGCCGGGCCCTGGTGAAGCGCCTGGCCCAGGTCCTTCCG 
GCCCGAGAGGCCGGTGCGGAAGTCAGCCTGGCCCTGGCCGGGGTCGCCGCCGACAGCCTCAGCCAAATGCTT 
CCGGGCCTCCCCGGCCTGCTTGGCGGCGGACAGACCGGCCAGTTGCTGGAAGGCCAGCGCCAGCGCCTGGTG 
CAGCAGATCGGCGCGGACCTGGAGAACACCCTGCTGTATGTCTACCGCGATCTCTCCGACGCGGAACTCACC 
CAGTACGTGAACTTCGCCGAGTCGCCGTCCGGCCGCAGCTACTACCAGGCGGCCCTGGCCGCGCTGAAAGCC 
GGCCTGGCGGTGGACCAGGCGGTCGCCCCCTGA