ViewGene

Locus Name:
GeneID:
Location:

GeneID:3306
TrivialName: PA14_03620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03620
PAO1 Ortholog Locus:PA0278
Sequence Length:753
Protein Length:250
Start: 327288
Stop: 326536
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03667.1|AE004466_1 (AE004466) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/250 (99%), Positives = 248/250 (99%)
Sequence:
ATGTCCGTCGACCTCCACGCCCTGATCCCGCTGATCGCCCTCACCTTCCTTCTCGCCGGCTTCGTCAAGGGC
GTGGTCGGCCTGGGCCTGCCGACGGTCTCGGTGGGCCTGCTCGGCCTGGCCATGCCGCCGATGCAGGCGGCG
GCGCTGCTGATCGTACCGTCGATGGTGACCAACCTCTGGCAGCTCGCCTGCGGCCCGCGCTTCCTCGGCTTG
ATGAAGCGCCTGGCCGGCCTGCTGCTCGGGGTGGTCGTGGGCACCCTGCTGGTCGGCGCATGGCTCGGCGGC
GACGCACCAAGGCAGGCCACCGGCGTGCTCGGCCTGGCCCTGGCGGCCTACGCGCTGCTCGGCCTGGCCGCG
ATCCCGCTGCACCTGCCGGCACGCCACGAGCCCTGGGCCGGCCCGCTGGTCGGGCTGGCGACCGGCGCGCTG
ACCGCGGTCACCGGGGTTTTCGTGATTCCCGCGGTGCCCTACCTGGGAGCCCTACGATTGCAGCGCGACGAA
CTGGTCCAGGCCCTCGGCCTGTCGTTCAGCGCCTCGACCCTGGCCCTGGCGGTCACTCTCGGCGTGCACGGC
GACCTGCTCGAACCGCAGATGCTCGGCGCCTCGCTGCTGACCCTGGTCCCGGCGCTGGGCGGGATGCTCCTC
GGCCAGTGGCTGCGCCAGCGGATCAGCGCGACGCTGTTCAGGCGCTGCTTCTTCGTCGGTCTCCTGCTGCTC
GGCGCCGACCTCGCCTGGCGCGGTTTCCACTGA
Translation:
MSVDLHALIPLIALTFLLAGFVKGVVGLGLPTVSVGLLGLAMPPMQAAALLIVPSMVTNLWQLACGPRFLGL
MKRLAGLLLGVVVGTLLVGAWLGGDAPRQATGVLGLALAAYALLGLAAIPLHLPARHEPWAGPLVGLATGAL
TAVTGVFVIPAVPYLGALRLQRDELVQALGLSFSASTLALAVTLGVHGDLLEPQMLGASLLTLVPALGGMLL
GQWLRQRISATLFRRCFFVGLLLLGADLAWRGFH*
AnnotationID:3314GeneID:3306
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:42
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0278
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70236.1|AE016663_4 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 254

 Score =  273 bits (697), Expect = 9e-73
 Identities = 153/243 (62%), Positives = 175/243 (72%), Gaps = 3/243 (1%)

>gb|AAO54337.1| (AE016858) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 254

 Score =  244 bits (623), Expect = 3e-64
 Identities = 140/241 (58%), Positives = 163/241 (67%), Gaps = 1/241 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:6615
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23757
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33625
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3306_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3306

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5304 PA0278_tr translation of PA0278 250 99.20 99.20 0 1242.0
148459 gb|AAG03667.1|AE004466_1 (AE004466) hypothetical protein PA0278 [Pseudomonas aeruginosa PAO1] 250 99.20 99.20 0 1242.0
148460 gb|AAN70236.1|AE016663_4 (AE016791) membrane protein, putative [Pseudomonas putida KT2440] 258 60.07 68.99 12 692.0
148461 gb|AAO54337.1| (AE016858) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 257 55.64 64.98 10 619.0
148462 dbj|BAB49382.1| (AP002999) hypothetical protein [Mesorhizobium loti] 258 53.10 65.11 17 607.0
GC ORFID: 46308How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0278Glimmer Score:
Start: 6128629Stop: 6127877
Length: 753
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0278 translation of PA0278Homolog Bit Score 483.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3523 (ORF: BLASTX 154.0), t_PA0278 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGTCGACCTCCACGCCCTGATCCCGCTGATCGCCCTCACCTTCCTTCTCGCCGGCTTCGTCAAGGGC
GTGGTCGGCCTGGGCCTGCCGACGGTCTCGGTGGGCCTGCTCGGCCTGGCCATGCCGCCGATGCAGGCGGCG
GCGCTGCTGATCGTACCGTCGATGGTGACCAACCTCTGGCAGCTCGCCTGCGGCCCGCGCTTCCTCGGCTTG
ATGAAGCGCCTGGCCGGCCTGCTGCTCGGGGTGGTCGTGGGCACCCTGCTGGTCGGCGCATGGCTCGGCGGC
GACGCACCAAGGCAGGCCACCGGCGTGCTCGGCCTGGCCCTGGCGGCCTACGCGCTGCTCGGCCTGGCCGCG
ATCCCGCTGCACCTGCCGGCACGCCACGAGCCCTGGGCCGGCCCGCTGGTCGGGCTGGCGACCGGCGCGCTG
ACCGCGGTCACCGGGGTTTTCGTGATTCCCGCGGTGCCCTACCTGGGAGCCCTACGATTGCAGCGCGACGAA
CTGGTCCAGGCCCTCGGCCTGTCGTTCAGCGCCTCGACCCTGGCCCTGGCGGTCACTCTCGGCGTGCACGGC
GACCTGCTCGAACCGCAGATGCTCGGCGCCTCGCTGCTGACCCTGGTCCCGGCGCTGGGCGGGATGCTCCTC
GGCCAGTGGCTGCGCCAGCGGATCAGCGCGACGCTGTTCAGGCGCTGCTTCTTCGTCGGTCTCCTGCTGCTC
GGCGCCGACCTCGCCTGGCGCGGTTTCCACTGA