ViewGene
Locus Name:
GeneID:
Location:

GeneID:3304
TrivialName: PA14_56920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56920
PAO1 Ortholog Locus:PA4378
Sequence Length:705
Protein Length:234
Start: 5073657
Stop: 5072953
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07766.1|AE004854_2 (AE004854) InaA protein [Pseudomonas aeruginosa PAO1]
Identities = 234/234 (100%), Positives = 234/234 (100%)
Sequence:
ATGGCTCCCGATCTGGCATCCCTGCAACGTATCTCCGGCGACTCCGCCATCGACCAGTGGTTGCAGGTACCC
GGCAGCTGGGTCGAGGAGCCCAACGAGCGCCGCGGCGGGGCCAGCGGCGTGCAGCGGGTGTACACCGGCGAT
GGACGGCTGCTCTATCGCAAGCAGCAGACCGGCCACGTCTACCGCGACTGGCAGCGCCCTTTCGGCTATCCC
ACCGCCATGCGCGAGCGCGATGCGCTACGGGCCTTCGAGTCGCTTGGTATTCGCGTGCCGCGCCTGGTCTAT
TCCGGCTGCCGCAAGGTCGACGGACAATGGCAGGCGCTGCTGGTGACCGAAGCCCTGGAGGGTTTCTCCAGC
CTCGACGAGTGCTATGCGCGCGGTGACCAGGACCGCTGGGGCGAAGCGAAGCACCAAAGAATTCTGCAACAA
ATCGGCGCTACCATTGCCCGGATGAATCTCGCCCACTGGCAGCACGGTTGTCTCTATCCGAAGCACATCTTC
GTCCGCGTCGAGGGCGAGGCCATCGAAGTAGCGCTGATCGACCTGGAGAAGAGCCGCCGCCGCCTTACGGTG
AACAAGGCGTCCCAGCACGACCTGAAGCAGTTGAAGCGCCGTTCGTCGTGGACTGGCGCGCAGTGGCAAGCC
TTCATCTATGGTTACCAGACGGCGTTTGGCAGCGCCATCAAAGGGTTGCAGACATGA
Translation:
MAPDLASLQRISGDSAIDQWLQVPGSWVEEPNERRGGASGVQRVYTGDGRLLYRKQQTGHVYRDWQRPFGYP
TAMRERDALRAFESLGIRVPRLVYSGCRKVDGQWQALLVTEALEGFSSLDECYARGDQDRWGEAKHQRILQQ
IGATIARMNLAHWQHGCLYPKHIFVRVEGEAIEVALIDLEKSRRRLTVNKASQHDLKQLKRRSSWTGAQWQA
FIYGYQTAFGSAIKGLQT*
AnnotationID:3312GeneID:3304
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 08:08:23
Gene Name:inaA
Confidence Code:2
GeneProduct:InaA protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:pH-inducible protein involved in stress response
Functional Category Confidence Code:5
COGs:pfam06293
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57821.1| (AE016871) inaA protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 240

 Score =  243 bits (619), Expect = 9e-64
 Identities = 116/215 (53%), Positives = 155/215 (72%), Gaps = 5/215 (2%)

>gb|AAN81233.1|AE016763_192 (AE016763) Protein inaA [Escherichia coli CFT073]
          Length = 216

 Score =  158 bits (399), Expect = 3e-38
 Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)

>gb|AAP17652.1| (AE016986) pH-inducible stress response protein [Shigella flexneri
           2a str. 2457T]
          Length = 216

 Score =  157 bits (398), Expect = 4e-38
 Identities = 79/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)






 
Structural Features:
pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family.
CD-Length = 206 residues, 100.0% aligned
Score =  214 bits (547), Expect = 1e-56 
Identities = 69/208 (33%), Positives = 96/208 (46%), Gaps = 6/208 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6611




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17135




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3304_cdd.html


    		




 
URL:

















    ReferenceID:23753




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32697




  
Author/Investigator(s):
        White S, Tuttle FE, Blankenhorn D, Dosch DC, Slonczewski JL.





  
Title:
        pH dependence and gene structure of inaA in Escherichia coli.




  
PubMed:
        1537798


MedLine:
        




    
Source:
J Bacteriol. 1992 Mar;174(5):1537-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1537798

















    ReferenceID:32698




  
Author/Investigator(s):
        Rosner JL, Slonczewski JL.





  
Title:
        Dual regulation of inaA by the multiple antibiotic resistance (mar) and superoxide (soxRS) stress response systems of Escherichia coli.




  
PubMed:
        7928997


MedLine:
        




    
Source:
J Bacteriol. 1994 Oct;176(20):6262-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7928997

















    ReferenceID:32699




  
Author/Investigator(s):
        Ariza RR, Li Z, Ringstad N, Demple B.





  
Title:
        Activation of multiple antibiotic resistance and binding of stress-inducible promoters by Escherichia coli Rob protein.




  
PubMed:
        7896685


MedLine:
        




    
Source:
J Bacteriol. 1995 Apr;177(7):1655-61.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7896685









           
Homologs By Global Alignment 

           

       



     
Gene ID:3304
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5302
                           PA4378_tr
                           translation of PA4378
                           234
                           99.99
                           99.99
                           0
                           1243.0
     

     
     
148433
                           gb|AAG07766.1|AE004854_2
                           (AE004854) InaA protein [Pseudomonas aeruginosa PAO1]
                           234
                           99.99
                           99.99
                           0
                           1243.0
     

     
     
148435
                           gb|AAO57821.1|
                           (AE016871) inaA protein [Pseudomonas syringae pv. tomato str. DC3000]
                           243
                           50.61
                           67.90
                           12
                           627.0
     

     
     
148434
                           gb|AAN66529.1|AE016281_10
                           (AE016777) InaA protein [Pseudomonas putida KT2440]
                           241
                           48.96
                           69.70
                           15
                           645.0
     

     
     
148436
                           gb|AAN81233.1|AE016763_192
                           (AE016763) Protein inaA [Escherichia coli CFT073]
                           241
                           35.26
                           52.69
                           32
                           402.0
     

     






      

          
GC ORFID: 46306How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4378Glimmer Score: 

          
Start: 4337333Stop: 4336629

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4378 translation of PA4378Homolog Bit Score 483.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2060 (ORF: BLASTX 250.0), t_PA4378 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCCCGATCTGGCATCCCTGCAACGTATCTCCGGCGACTCCGCCATCGACCAGTGGTTGCAGGTACCC 
GGCAGCTGGGTCGAGGAGCCCAACGAGCGCCGCGGCGGGGCCAGCGGCGTGCAGCGGGTGTACACCGGCGAT 
GGACGGCTGCTCTATCGCAAGCAGCAGACCGGCCACGTCTACCGCGACTGGCAGCGCCCTTTCGGCTATCCC 
ACCGCCATGCGCGAGCGCGATGCGCTACGGGCCTTCGAGTCGCTTGGTATTCGCGTGCCGCGCCTGGTCTAT 
TCCGGCTGCCGCAAGGTCGACGGACAATGGCAGGCGCTGCTGGTGACCGAAGCCCTGGAGGGTTTCTCCAGC 
CTCGACGAGTGCTATGCGCGCGGTGACCAGGACCGCTGGGGCGAAGCGAAGCACCAAAGAATTCTGCAACAA 
ATCGGCGCTACCATTGCCCGGATGAATCTCGCCCACTGGCAGCACGGTTGTCTCTATCCGAAGCACATCTTC 
GTCCGCGTCGAGGGCGAGGCCATCGAAGTAGCGCTGATCGACCTGGAGAAGAGCCGCCGCCGCCTTACGGTG 
AACAAGGCGTCCCAGCACGACCTGAAGCAGTTGAAGCGCCGTTCGTCGTGGACTGGCGCGCAGTGGCAAGCC 
TTCATCTATGGTTACCAGACGGCGTTTGGCAGCGCCATCAAAGGGTTGCAGACATGA