ViewGene
Locus Name:
GeneID:
Location:

GeneID:3303
TrivialName: PA14_19390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19390
PAO1 Ortholog Locus:PA3457
Sequence Length:753
Protein Length:250
Start: 1676673
Stop: 1675921
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06845.1|AE004766_6 (AE004766) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/250 (99%), Positives = 250/250 (100%)
Sequence:
ATGGATGTACTGCTCTTCGAATCCCTGGGCATCGGCGCCGTTCTCGGCCTGCTGCTCGGCCTCACCGGCGCC
GGCGGCTCGCTGGTCGCCCTGCCCCTGCTGCTCAGCCTGCACCTGCCGCTGCGCGACGCCATCGGCGTGAGC
CTCGGCGCGGTCGCCCTGTCGGCGCTGATCGGCGCCATCCCGCGCGCTCGCCAGGGCCAGGTGGCCTGGCGG
CCGGTGCTGGTCCTGGCGCTGGCCGGCCTGCCGAGCAACGCCGTCGGCCAATGGCTCGGCCGCTTCGTCCCG
GAAGGCGTGCTGATCGTCGCCTTCTGCCTGCTGGTGCTCTGGTCGGCCTGGCGCATGTGGCGCGGCGCCGGG
ATGAAACGCGAGGCCAGCGACCAGGCACGGAGCCTGCCGCTGCTCGGCATCGGCCTGGCGGTCGGCTTACTG
TCGGGATTGATGGGCGTGGGCGGCGGTTTCCTGGTGGTGCCGGGGCTGCTCTGGTTCACCCCGCTGTCGATG
ATGGCCGCCACCGCCACCTCGATGGCGGTGATCGCGCTGGTCTCCGGCGGCGGCTTCCTGATCTACCTGACC
GGCGCCCACCCGCCGCTGCCGCTGCTCGGCGGCCTCGCCGCCGGCGGCGCGGTCGGCGTGCTCGGCGGCAAC
CTGCTGGCGCAGCGCCTCGGCGGCCCGACCCTGCAACGCCTGTTCGCGCTGATGCTGGTGGCGGTGAGCTTC
TCCCTGGCGGCGCAGAAGCTCTACGGCGGGTAG
Translation:
MDVLLFESLGIGAVLGLLLGLTGAGGSLVALPLLLSLHLPLRDAIGVSLGAVALSALIGAIPRARQGQVAWR
PVLVLALAGLPSNAVGQWLGRFVPEGVLIVAFCLLVLWSAWRMWRGAGMKREASDQARSLPLLGIGLAVGLL
SGLMGVGGGFLVVPGLLWFTPLSMMAATATSMAVIALVSGGGFLIYLTGAHPPLPLLGGLAAGGAVGVLGGN
LLAQRLGGPTLQRLFALMLVAVSFSLAAQKLYGG*
AnnotationID:3311GeneID:3303
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 21:09:33
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA3457
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01925,COG0730
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15243.1| (AL646065) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 273

 Score =  155 bits (392), Expect = 2e-37
 Identities = 103/262 (39%), Positives = 142/262 (54%), Gaps = 22/262 (8%)

>gb|AAO53662.1| (AE016856) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 272

 Score =  137 bits (346), Expect = 4e-32
 Identities = 92/256 (35%), Positives = 137/256 (53%), Gaps = 23/256 (8%)

>dbj|BAB97446.1| (AP005274) Hypothetical membrane protein [Corynebacterium
           glutamicum ATCC 13032]
          Length = 263

 Score =  134 bits (336), Expect = 6e-31
 Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 2/239 (0%)








 
Structural Features:
COG0730, Predicted permeases
CD-Length = 258 residues,  99.2% aligned
Score = 65.8 bits (160), Expect = 5e-12
Identities = 95/256 (37%), Positives = 129/256 (50%), Gaps = 6/256 (2%








   
Genomic Context:






   
Comment:


















    ReferenceID:6609




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23751




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32113




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3303_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3303
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5301
                           PA3457_tr
                           translation of PA3457
                           250
                           99.60
                           99.99
                           0
                           1244.0
     

     
     
148431
                           gb|AAG06845.1|AE004766_6
                           (AE004766) hypothetical protein PA3457 [Pseudomonas aeruginosa PAO1]
                           250
                           99.60
                           99.99
                           0
                           1244.0
     

     
     
148432
                           gb|AAQ57721.1|
                           (AE016910) probable transmembrane protein [Chromobacterium violaceum ATCC 12472]
                           269
                           39.03
                           53.90
                           25
                           403.0
     

     






      

          
GC ORFID: 46305How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3457Glimmer Score: 

          
Start: 3277259Stop: 3278011

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3457 translation of PA3457Homolog Bit Score 483.0

          
Other Homologs:  t_PA3457 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGTACTGCTCTTCGAATCCCTGGGCATCGGCGCCGTTCTCGGCCTGCTGCTCGGCCTCACCGGCGCC 
GGCGGCTCGCTGGTCGCCCTGCCCCTGCTGCTCAGCCTGCACCTGCCGCTGCGCGACGCCATCGGCGTGAGC 
CTCGGCGCGGTCGCCCTGTCGGCGCTGATCGGCGCCATCCCGCGCGCTCGCCAGGGCCAGGTGGCCTGGCGG 
CCGGTGCTGGTCCTGGCGCTGGCCGGCCTGCCGAGCAACGCCGTCGGCCAATGGCTCGGCCGCTTCGTCCCG 
GAAGGCGTGCTGATCGTCGCCTTCTGCCTGCTGGTGCTCTGGTCGGCCTGGCGCATGTGGCGCGGCGCCGGG 
ATGAAACGCGAGGCCAGCGACCAGGCACGGAGCCTGCCGCTGCTCGGCATCGGCCTGGCGGTCGGCTTACTG 
TCGGGATTGATGGGCGTGGGCGGCGGTTTCCTGGTGGTGCCGGGGCTGCTCTGGTTCACCCCGCTGTCGATG 
ATGGCCGCCACCGCCACCTCGATGGCGGTGATCGCGCTGGTCTCCGGCGGCGGCTTCCTGATCTACCTGACC 
GGCGCCCACCCGCCGCTGCCGCTGCTCGGCGGCCTCGCCGCCGGCGGCGCGGTCGGCGTGCTCGGCGGCAAC 
CTGCTGGCGCAGCGCCTCGGCGGCCCGACCCTGCAACGCCTGTTCGCGCTGATGCTGGTGGCGGTGAGCTTC 
TCCCTGGCGGCGCAGAAGCTCTACGGCGGGTAG