ViewGene
Locus Name:
GeneID:
Location:

GeneID:3302
TrivialName: PA14_23200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23200
PAO1 Ortholog Locus:PA3173
Sequence Length:741
Protein Length:246
Start: 2010406
Stop: 2009666
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06561.1|AE004741_6 (AE004741) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 245/246 (99%), Positives = 245/246 (99%)
Sequence:
ATGTTCCAGTACTCCGCCCGCCCCGACCTGCTGAAAGACCGCGTGATCCTGGTCACCGGCGCCGGCCGCGGC
ATCGGCGCCGCCGCCGCCAAGACCTTCGCCGCCCACGGCGCCACCGTGCTGCTGCTGGGCAAGACCGAGGAG
TACCTGAACGAGGTCTACGACGCCATCGAGGCCGCCGGCCATCCGCAGGCCGCCGTGATCCCGTTCAACCTG
GAGACCGCCCAGCCGCACCAGTTCGAGGAACTGGCGGCAACCCTGGAGAACGAGTTCGGCCGCATCGACGGC
CTGCTGCACAACGCTTCGATCCTCGGTCCGCGCTCGCCGATGCAACAGATTTCCGGGGAGAACTTCATGCGC
GTGATGCAGGTGAACGTCAATGCCATGTTCATGCTGACCACCGCCATGCTGCCGCTGATGAAGCTCTCCAGC
GACGCCTCGATCATCTTCACCTCGAGCAGCGTGGGCCGGAAGGGCCGCGCCTACTGGGGCGCCTATTCGGTA
TCGAAGTTCGCCACCGAGGGCCTGATGCAGACCCTTGCCGACGAACTCGACGGTACCAGCGCGATCCGCGCC
AACAGCGTCAACCCCGGCGCCACCCGCACCAGCATGCGCGCCCTCGCCTACCCTGGGGAAAACCCGCTGAAC
AACCCCACCGGCGAGGAGATCATGCCGGTCTACCTGTACCTCATGGGGCCGGACAGCGCCGGCGTCAACGGC
CAGGCCTTCGACGCCCAGTGA
Translation:
MFQYSARPDLLKDRVILVTGAGRGIGAAAAKTFAAHGATVLLLGKTEEYLNEVYDAIEAAGHPQAAVIPFNL
ETAQPHQFEELAATLENEFGRIDGLLHNASILGPRSPMQQISGENFMRVMQVNVNAMFMLTTAMLPLMKLSS
DASIIFTSSSVGRKGRAYWGAYSVSKFATEGLMQTLADELDGTSAIRANSVNPGATRTSMRALAYPGENPLN
NPTGEEIMPVYLYLMGPDSAGVNGQAFDAQ*
AnnotationID:3310GeneID:3302
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 13:01:16
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, short-chain dehydrogenase/reductase family
Cell Localization:()
Synonyms:yciK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67383.1|AE016364_8 (AE016780) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas putida KT2440]
          Length = 246

 Score =  402 bits (1032), Expect = e-111
 Identities = 195/246 (79%), Positives = 222/246 (90%)

>gb|AAO55260.1| (AE016862) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 246

 Score =  360 bits (923), Expect = 5e-99
 Identities = 178/246 (72%), Positives = 207/246 (84%)

>gb|AAN55949.1|AE015733_1 (AE015733) oxidoreductase, short-chain dehydrogenase/reductase
           family [Shewanella oneidensis MR-1]
          Length = 245

 Score =  289 bits (740), Expect = 9e-78
 Identities = 146/246 (59%), Positives = 181/246 (73%), Gaps = 1/246 (0%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues,  97.6% aligned
Score =  149 bits (377), Expect = 3e-37
Identities = 80/246 (32%), Positives = 105/246 (42%), Gaps = 23/246 (9%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  97.2% aligned
Score =  147 bits (372), Expect = 1e-36
Identities = 87/249 (34%), Positives = 121/249 (48%), Gaps = 19/249 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23749




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3302
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5300
                           PA3173_tr
                           translation of PA3173
                           246
                           99.59
                           99.59
                           0
                           1242.0
     

     
     
148404
                           gb|AAG06561.1|AE004741_6
                           (AE004741) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           246
                           99.59
                           99.59
                           0
                           1242.0
     

     
     
148405
                           gb|AAN67383.1|AE016364_8
                           (AE016780) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas putida KT2440]
                           246
                           79.26
                           90.24
                           0
                           1032.0
     

     
     
148406
                           gb|AAO55260.1|
                           (AE016862) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           246
                           72.35
                           84.14
                           0
                           923.0
     

     
     
148407
                           gb|AAN55949.1|AE015733_1
                           (AE015733) oxidoreductase, short-chain dehydrogenase/reductase family [Shewanella oneidensis MR-1]
                           246
                           59.34
                           73.57
                           1
                           742.0
     

     






      

          
GC ORFID: 46304How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3173Glimmer Score: 

          
Start: 2943525Stop: 2944265

          
Length: 741


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3173 translation of PA3173Homolog Bit Score 483.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7691 (ORF: BLASTX 347.0), t_PA3173 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCAGTACTCCGCCCGCCCCGACCTGCTGAAAGACCGCGTGATCCTGGTCACCGGCGCCGGCCGCGGC 
ATCGGCGCCGCCGCCGCCAAGACCTTCGCCGCCCACGGCGCCACCGTGCTGCTGCTGGGCAAGACCGAGGAG 
TACCTGAACGAGGTCTACGACGCCATCGAGGCCGCCGGCCATCCGCAGGCCGCCGTGATCCCGTTCAACCTG 
GAGACCGCCCAGCCGCACCAGTTCGAGGAACTGGCGGCAACCCTGGAGAACGAGTTCGGCCGCATCGACGGC 
CTGCTGCACAACGCTTCGATCCTCGGTCCGCGCTCGCCGATGCAACAGATTTCCGGGGAGAACTTCATGCGC 
GTGATGCAGGTGAACGTCAATGCCATGTTCATGCTGACCACCGCCATGCTGCCGCTGATGAAGCTCTCCAGC 
GACGCCTCGATCATCTTCACCTCGAGCAGCGTGGGCCGGAAGGGCCGCGCCTACTGGGGCGCCTATTCGGTA 
TCGAAGTTCGCCACCGAGGGCCTGATGCAGACCCTTGCCGACGAACTCGACGGTACCAGCGCGATCCGCGCC 
AACAGCGTCAACCCCGGCGCCACCCGCACCAGCATGCGCGCCCTCGCCTACCCTGGGGAAAACCCGCTGAAC 
AACCCCACCGGCGAGGAGATCATGCCGGTCTACCTGTACCTCATGGGGCCGGACAGCGCCGGCGTCAACGGC 
CAGGCCTTCGACGCCCAGTGA