ViewGene
Locus Name:
GeneID:
Location:

GeneID:3301
TrivialName: PA14_27900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27900
PAO1 Ortholog Locus:PA2802
Sequence Length:720
Protein Length:239
Start: 2415466
Stop: 2416185
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06190.1|AE004707_9 (AE004707) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 239/239 (100%), Positives = 239/239 (100%)
Sequence:
ATGCCGGTCGATCAATCTCGTCAGTACCTGCGCATCCGCGACCAGCTCGCCGCGGATATCGCCCAGGGCGTG
CTGCAGGTGAAACTTCCCTCCGAGCGGGAGTTGGCCGAGCGCTTCCTGTGTACCCGCATCACCCTTCGCGAA
GCCCTGCAGCAACTGGAAACCGAAGGCCTGGTCTATCGCGAGAACCGCCGCGGCTGGTTCGTCGCGCCGCCG
CGGATCCGCTACAACCCGACCCGTACCACCGGCTTCATGGAATACGTCAGCGCCCAGGGACGCCAGCCGCGT
ACCGAGACGCTGCACGCCGAGCGGCGAGCAGCCGGCGCCTGGCTGGCCAAGCGGATGGGGCTGGAGGACAGC
GCGCCGGTGTATTTCCTGCAACGGCGCCGCTGGGTGGACGAGCGTCCGGTGCTGATCGAACTGATCGCCCTG
GATGCCGGGTGGTGCCCAGGCCTGCTGGACCACGACCTCGATACTTCGCTGATGAGCCTGCTGCGCGAGCGT
TTCGGCCTGCAGCCGACGCGCTGCCAACTGGCGATGCACCCGACCGCGCTGAACGCGGCCCAGGCCGAGCCG
CTGCAACTGGCGCCGGGTTCGCCGGCGCTGTACCTGGAGCGACTGAGTTACGCGGAGGGGCAGAGGGTGGTC
GAGTTCGACCAGGAGTTCTGGCGCCCGGACGCCCTGGAGATCGTGCTCGACGCGGCCTATCCGGGCGCCTGA
Translation:
MPVDQSRQYLRIRDQLAADIAQGVLQVKLPSERELAERFLCTRITLREALQQLETEGLVYRENRRGWFVAPP
RIRYNPTRTTGFMEYVSAQGRQPRTETLHAERRAAGAWLAKRMGLEDSAPVYFLQRRRWVDERPVLIELIAL
DAGWCPGLLDHDLDTSLMSLLRERFGLQPTRCQLAMHPTALNAAQAEPLQLAPGSPALYLERLSYAEGQRVV
EFDQEFWRPDALEIVLDAAYPGA*
AnnotationID:3309GeneID:3301
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2802
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM38375.1| (AE012002) transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 242

 Score =  238 bits (607), Expect = 2e-62
 Identities = 127/235 (54%), Positives = 160/235 (68%), Gaps = 4/235 (1%)

>gb|AAL07521.1| (AF325732) putative transcriptional regulator [Xanthomonas oryzae
           pv. oryzae]
          Length = 242

 Score =  236 bits (602), Expect = 8e-62
 Identities = 127/235 (54%), Positives = 162/235 (68%), Gaps = 4/235 (1%)








 
Structural Features:
COG2188, PhnF, Transcriptional regulators [Transcription]
CD-Length = 236 residues, 100.0% aligned
Score =  200 bits (510), Expect = 1e-52
Identities = 90/236 (38%), Positives = 130/236 (55%), Gaps = 2/236 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6605




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23747




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36229




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3301_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3301
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5297
                           PA2802_tr
                           translation of PA2802
                           239
                           99.99
                           99.99
                           0
                           1242.0
     

     
     
148392
                           gb|AAG06190.1|AE004707_9
                           (AE004707) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           239
                           99.99
                           99.99
                           0
                           1242.0
     

     
     
148395
                           gb|AAM39988.1|
                           (AE012166) transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           245
                           52.24
                           65.30
                           9
                           596.0
     

     
     
148393
                           gb|AAM38375.1|
                           (AE012002) transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306]
                           247
                           51.82
                           65.99
                           13
                           610.0
     

     
     
148394
                           gb|AAL07521.1|
                           (AF325732) putative transcriptional regulator [Xanthomonas oryzae pv. oryzae]
                           247
                           51.82
                           66.80
                           13
                           605.0
     

     






      

          
GC ORFID: 46303How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2802Glimmer Score: 

          
Start: 2538460Stop: 2537741

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2802 translation of PA2802Homolog Bit Score 483.0

          
Other Homologs:  t_PA3249 (ORF: BLASTX 178.0), t_PA1142 (ORF: BLASTX 163.0), t_PA2802 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGTCGATCAATCTCGTCAGTACCTGCGCATCCGCGACCAGCTCGCCGCGGATATCGCCCAGGGCGTG 
CTGCAGGTGAAACTTCCCTCCGAGCGGGAGTTGGCCGAGCGCTTCCTGTGTACCCGCATCACCCTTCGCGAA 
GCCCTGCAGCAACTGGAAACCGAAGGCCTGGTCTATCGCGAGAACCGCCGCGGCTGGTTCGTCGCGCCGCCG 
CGGATCCGCTACAACCCGACCCGTACCACCGGCTTCATGGAATACGTCAGCGCCCAGGGACGCCAGCCGCGT 
ACCGAGACGCTGCACGCCGAGCGGCGAGCAGCCGGCGCCTGGCTGGCCAAGCGGATGGGGCTGGAGGACAGC 
GCGCCGGTGTATTTCCTGCAACGGCGCCGCTGGGTGGACGAGCGTCCGGTGCTGATCGAACTGATCGCCCTG 
GATGCCGGGTGGTGCCCAGGCCTGCTGGACCACGACCTCGATACTTCGCTGATGAGCCTGCTGCGCGAGCGT 
TTCGGCCTGCAGCCGACGCGCTGCCAACTGGCGATGCACCCGACCGCGCTGAACGCGGCCCAGGCCGAGCCG 
CTGCAACTGGCGCCGGGTTCGCCGGCGCTGTACCTGGAGCGACTGAGTTACGCGGAGGGGCAGAGGGTGGTC 
GAGTTCGACCAGGAGTTCTGGCGCCCGGACGCCCTGGAGATCGTGCTCGACGCGGCCTATCCGGGCGCCTGA