ViewGene
Locus Name:
GeneID:
Location:

GeneID:3300
TrivialName: PA14_40390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40390
PAO1 Ortholog Locus:PA1863
Sequence Length:756
Protein Length:251
Start: 3610001
Stop: 3610756
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05252.1|AE004612_6 (AE004612) molybdate-binding periplasmic protein precursor ModA [Pseudomonas aeruginosa PAO1]
Identities = 248/251 (98%), Positives = 250/251 (99%)
Sequence:
ATGACCACCCGCCTGCCCCAGCTATTGCTCGCCCTCCTCGCCAGCGCCGTATCCCTGGCCGCCAGCGCCGAC
GAGGTGCAGGTCGCCGTCGCGGCCAACTTCACCGCGCCGATCCAGGCCATCGCCAAGGAATTCGAGAAAGAC
ACCGGGCACAGGCTGGTCGCCGCCTACGGCGCCACCGGCCAGTTCTATACGCAGATCAAGAACGGCGCGCCG
TTCCAGGTTTTCCTCTCCGCCGACGACAGCACTCCGGCGAAACTGGAGCAGGAAGGCGAGATCGTGCCCGGC
TCGCGCTTCACCTATGCCATCGGCACCCTGGCACTCTGGTCGCCCAAGGCCGGCTACGTCGACGCCAAGGGC
GAGGTGCTGAAGAGCGGCAGCTTCAGGCACCTGTCCATCGCCAACCCGAAGACCGCGCCCTACGGCCTCGCC
GCCACCCAGGCGATGGACAAGCTCGGCCTCGCCGCCACGCTCGGGCCGAAGCTGGTGGAAGGCCAGAACATC
AGCCAGGCCTACCAGTTCGTTTCCAGCGGCAACGCCGAACTGGGCTTCGTCGCCCTGTCGCAGATCTACAAG
GATGGTAAAGTCGCAACCGGCTCGGCCTGGATCGTTCCCGCCGAGCTGCACGACCCGATCCGCCAGGACGCG
GTCATCCTCAACAAAGGCAAGGACAACGCCGCCGCCAAGGCCCTGGTCGACTACCTGAAGGGCGCCAAGGCC
GCCGCGCTGATCAAGTCCTACGGCTACGAACTCTAA
Translation:
MTTRLPQLLLALLASAVSLAASADEVQVAVAANFTAPIQAIAKEFEKDTGHRLVAAYGATGQFYTQIKNGAP
FQVFLSADDSTPAKLEQEGEIVPGSRFTYAIGTLALWSPKAGYVDAKGEVLKSGSFRHLSIANPKTAPYGLA
ATQAMDKLGLAATLGPKLVEGQNISQAYQFVSSGNAELGFVALSQIYKDGKVATGSAWIVPAELHDPIRQDA
VILNKGKDNAAAKALVDYLKGAKAAALIKSYGYEL*
AnnotationID:3308GeneID:3300
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 06:06:50
Gene Name:modA
Confidence Code:2
GeneProduct:molybdate-binding periplasmic protein precursor modA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0725
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69422.1|AE016578_8 (AE016788) molybdate ABC transporter, periplasmic molybdate-binding
           protein [Pseudomonas putida KT2440]
          Length = 252

 Score =  387 bits (994), Expect = e-107
 Identities = 197/251 (78%), Positives = 216/251 (86%), Gaps = 1/251 (0%)

>gb|AAO56465.1| (AE016866) molybdate ABC transporter, periplasmic molybdate-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 237

 Score =  378 bits (971), Expect = e-104
 Identities = 187/231 (80%), Positives = 210/231 (90%)

>emb|CAE31324.1| (BX640439) molybdate-binding periplasmic protein precursor
           [Bordetella bronchiseptica]
          Length = 251

 Score =  360 bits (924), Expect = 4e-99
 Identities = 181/251 (72%), Positives = 211/251 (84%)






 
Structural Features:
COG0725, ModA, ABC-type molybdate transport system, periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  93.8% aligned
Score =  195 bits (496), Expect = 6e-51
Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 3/244 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6603




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23745




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37078




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3300_cdd.html


    		




 
URL:

















    ReferenceID:37782




  
Author/Investigator(s):
        Maupin-Furlow JA, Rosentel JK, Lee JH, Deppenmeier U, Gunsalus RP, Shanmugam KT.





  
Title:
        Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli.




  
PubMed:
        7665460


MedLine:
        




    
Source:
J Bacteriol. 1995 Sep;177(17):4851-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7665460

















    ReferenceID:37783




  
Author/Investigator(s):
        Rech S, Wolin C, Gunsalus RP.





  
Title:
        Properties of the periplasmic ModA molybdate-binding protein of Escherichia coli.




  
PubMed:
        8576221


MedLine:
        




    
Source:
J Biol Chem. 1996 Feb 2;271(5):2557-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=96161991&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:3300
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5296
                           PA1863_tr
                           translation of PA1863
                           251
                           98.80
                           99.60
                           0
                           1242.0
     

     
     
148376
                           gb|AAG05252.1|AE004612_6
                           (AE004612) molybdate-binding periplasmic protein precursor ModA [Pseudomonas aeruginosa PAO1]
                           251
                           98.80
                           99.60
                           0
                           1242.0
     

     
     
148377
                           gb|AAN69422.1|AE016578_8
                           (AE016788) molybdate ABC transporter, periplasmic molybdate-binding protein [Pseudomonas putida KT2440]
                           252
                           78.17
                           85.71
                           1
                           994.0
     

     
     
148378
                           gb|AAO56465.1|
                           (AE016866) molybdate ABC transporter, periplasmic molybdate-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           74.50
                           84.46
                           14
                           966.0
     

     
     
148381
                           emb|CAE43363.1|
                           (BX640420) molybdate-binding periplasmic protein precursor [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           251
                           72.11
                           84.06
                           0
                           924.0
     

     






      

          
GC ORFID: 46302How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1863Glimmer Score: 

          
Start: 1343909Stop: 1343154

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1863 translation of PA1863Homolog Bit Score 483.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7033 (ORF: BLASTX 377.0), t_PA1863 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCCGCCTGCCCCAGCTATTGCTCGCCCTCCTCGCCAGCGCCGTATCCCTGGCCGCCAGCGCCGAC 
GAGGTGCAGGTCGCCGTCGCGGCCAACTTCACCGCGCCGATCCAGGCCATCGCCAAGGAATTCGAGAAAGAC 
ACCGGGCACAGGCTGGTCGCCGCCTACGGCGCCACCGGCCAGTTCTATACGCAGATCAAGAACGGCGCGCCG 
TTCCAGGTTTTCCTCTCCGCCGACGACAGCACTCCGGCGAAACTGGAGCAGGAAGGCGAGATCGTGCCCGGC 
TCGCGCTTCACCTATGCCATCGGCACCCTGGCACTCTGGTCGCCCAAGGCCGGCTACGTCGACGCCAAGGGC 
GAGGTGCTGAAGAGCGGCAGCTTCAGGCACCTGTCCATCGCCAACCCGAAGACCGCGCCCTACGGCCTCGCC 
GCCACCCAGGCGATGGACAAGCTCGGCCTCGCCGCCACGCTCGGGCCGAAGCTGGTGGAAGGCCAGAACATC 
AGCCAGGCCTACCAGTTCGTTTCCAGCGGCAACGCCGAACTGGGCTTCGTCGCCCTGTCGCAGATCTACAAG 
GATGGTAAAGTCGCAACCGGCTCGGCCTGGATCGTTCCCGCCGAGCTGCACGACCCGATCCGCCAGGACGCG 
GTCATCCTCAACAAAGGCAAGGACAACGCCGCCGCCAAGGCCCTGGTCGACTACCTGAAGGGCGCCAAGGCC 
GCCGCGCTGATCAAGTCCTACGGCTACGAACTCTAA