ViewGene

Locus Name:
GeneID:
Location:

GeneID: 33

TrivialName: PA14_31690

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_31690

PAO1 Ortholog Locus: PA2542

Sequence Length: 3666

Protein Length: 1221

Start: 2753561

Stop: 2757226

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05930.1|AE004682_2 (AE004682) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 1213/1221 (99%), Positives = 1216/1221 (99%)

Sequence:

GTGAAGGCGCTGAAGATCACCCTGCTGGCCATAGTCGGGCTGCTCCTCGCGCTGCTCCTGGGACTCGCTGCG
CTGCTCGGCACCCAGGCCGGCAGCGCCTGGCTGCTCGGCCGCGTGCCGGGCCTGCAGGTCAGCGGCTTCGAG
GGTCGCCTCGGTGGCGCCTGGCAGGCACAGCGGCTGTCCTGGGCGCAGGACGGTACGCAACTGGTCGTCGAG
CGGCCGGAACTGCGCTGGTCGCCGGCTTGCCTGGCGGGGCTGCGCCTGTGCCTGCAGCGGGTGGCCGCCGAG
CGGGTCGCGCTGGACCTGCCGCCGAGCGGCGACAGCGCCGACAGCGGGCCGATCAGCCTGCCGACGCTGAAA
CTGCCGCTGAGCATCGAACTCGGCGAAGTGGCGGTCGGCAGCTTCCTGCTCGACGGCAACCAGCAGGTCGCC
GAACTCAAGCTGGCGGCCCATTGGCTGGCCGACGGCCTGCACATCGACTCGCTGACGGCGCGGGGCTTCGGC
CTGGACCTGGCGCTCCAGGGGCGCTTGCAGCCGAGCGGCGACTGGCCCTTGCAGGCCGAAGCCACGCTCGGC
CTGCCCGCTCCCGAAGGCAAGCCGTGGAAGCTGGCCGTCCAGGTCGGCGGTGAGCTGCAGCAGGCGCTGACC
CTGAAAGGCCGCAGCAGCGGTTACCTGGACGGCAGCCTGGAAGGACAGTTGCAGGCGCTGGCGGAAAACCTG
CCGGCACGATTGCTGATCCGCGCCGACGGTTTCAAGGGTGCGGCCGGACTACCGGACACCTTGACCCTGAAT
GCCATCCAGCTCGATGCCGGCGGCGATCTCAAGAGCGGTTACCTGATCCGCGGCGGCGCCAGCCTGCCGGGC
GAGGGCGGGGCGGTGGCGTTGAGCCTGGACGGGCGGGTCGACGCCCAGGGCGCGGATATCCGCCAACTGCGC
CTGGACGCTGGCGGCGAGCAGCGCCTGGAGCTGGTCGGACGCCTGGACTGGCGCGAAAGCCTGGCCGCCGAC
GCGACCCTGGACTGGAAGGATTTCCCCTGGCTGCGCCTGTATCCGCTGGCGGAGCCGCCGCCGGTGACGCTG
AAGACCTTCAAGGCGGAAGTGCATTACCAGGACCAGCGCTACCTGGGCAATTTCAGCGCGGCGGCGAGCGGT
CCGGCGGGCGACTTCACGCTGGCCAGCCCGGTGTCCGGCGACCTCGTCCAGCTCAACCTGCCGTCGCTGCAG
CTCCGCGCCGGGCAAGGCCAGGCCGAGGGGCGGGTGACGTTGCGTTTCGACAATGGCGTGGCTTGGGATACC
GCCCTGCAGCTCAGCGAACTGAACCCGGCGTACTGGGTCGCCGAGCTGCCGGGTTCACTGGCCGGTCCCTTG
CGCAGCCAGGGAAGTGTTCGCGACGAGCGACTGGCGTTGGGCGTGGATCTCGACGTCAAGGGTCGCCTGCGC
GGCCAGCCGGCGCTATTCCAGGCGCGCGCCGAAGGCGAGGGGCAGCGCTGGACGCTGGGCAACCTCGACCTG
CGCCTGGGGGATAACAAGGTGCAGGGCAGCGGGGCGCTCGACCAGCGCCTGCAAGGCCGCCTGGACATCGCC
CTGAACCGTCTCGGCCAGCTTTGGCCGCAACTCTTCGGTCGCCTCGACGGACGCCTCGACCTGGCTGGCAGC
CTCGCGGCGCCGCAAGGCAGGCTGAACCTCAAGGGACAGCAGATCGCCTACGCCGAGCAGCGCATCGCCGGC
CTCGACCTGCAGGCGAACCTCGATGCCCGGCAGAACGGCACCCTGGCACTGGTCGCTTCCGGCCTGCGCAGC
GGCGAAACCGATCTCGGCCTGTTCAAGGCCAATGCCCGCGGCGACCAACACCGCCAGCAACTGGAACTGGAC
CTGCAAGGTGCCTTGCTCAAGCTCGGCCTGGCCTTCGACGGGCAGCTGGAGCGCGGCAACTGGCGCGGTCGC
CTGGCGCGCGGCGAGTTGAGCAGCGGCGGCCAGGACTGGAAGCTACAGCAGCCGGCGCGCCTGGAGCGGTTG
GCCGACGGCAGGGTCAATTTCGGCGCACATTGCTGGGTATCCGGCGGCGCCAGCCTCTGCGGCGGCGAGCAG
CGCCTGCTGCCCGAGCCGCGGCTGCGCTATACCTTGCGCGACTTCCCGCTGGACAGCCTGAAGCAATGGTTC
CCCGAGGATTTCGCCTGGCAGGGCAAGCTGAACGGCGACCTGCAACTGGACGTTCCGGCCCGCGGCCCGAGC
GGCGTGGTCAGCCTGGACGCCGGCAGCGGTACGCTGCGCCTGCGCGACCAGGGCCAGTGGGTCGACGTCGGC
TACGACAGCCTGCGCCTGGAGAGCCGGCTGGCGCCCAACCGCGTCGATACCTCCCTCGACTTCCGCGGACCG
AAGCTCGGCGAGTTGCGGGTGCAGGCGCAGATCGACCCGCGCCCGGCGAGCAAGCCGCTGAGCGGCGAGTTC
AGCCTGGCCGGCCTCGACCTGTCGGTGGCGCGCCCGTTCGTGCCGATGGTGGAGAAACTGCAAGGCAGGCTG
AACGGCAGCGGCCGGCTGTCCGGCGGCCTGCTGGCGCCGCGGGTCGACGGACGGGTGACGCTGAGCGACGGC
AACATCGGCGGCGGCGAGCTGCCGACCAGCTTCGAGAACCTTTCCCTCGACGCTCGCATCGCTGGCGAAAGC
CTGGAACTCGGCGGCGGCTGGCGCAGCGGCAGGTACGGCCAGGGCAGCCTGTCCGGCAACCTGAGCTGGGGC
GAGGCGCTGAACGTCGCCCTGAACATTCGTGGCAACCGCCTGCCGGTGGTGGTCGATCCCTATGCGCAACTG
GAGGTGGAACCGGACCTGAAGATCGGCATGGCCGGCCAGGAGCTGGCGATCTCCGGCAAGGTCCTGGTGCCG
CGTGGCGACATCACCATCCGCCAGTTGCCGCCATCGACGGTCAAGGTCTCCGACGACGCGGTGATCGTCGGC
TCCGAGCAGCCCGAGCAGCAGCCGCTGAAGATGAAGATGGACATCGATGTCGAGGTCGGCCAGGACAAGCTG
GCGTTCTCCGGCTTCGGCCTCAGCGCCGAACTGGCAGGCCACCTGCACATCGGCGACAACCTGGATACCCGC
GGCGAGCTGAACCTGAACAAGGGCCGCTATCGTGCCTACGGCCAGCGCCTGACGATCCGTAGGGCGCGGCTG
TTCTTCGCCGGACCGATCGACCAGCCGTACCTGGATATCGAGGCGATCCGCCGGGTCGACGATGTGGTCGCC
GGCCTGCGCCTGACCGGCAGCGCCGAGCAGCCGACCAGCGCGGTATTCTCCGAACCGGCGATGAGCCAGGAG
CAGGCGCTGTCCTACCTGGTGCTGGGGCGGCCGATGAGCACCGGCGAAGACAGCAACATGCTCGGCGAGGCG
GCCCTGGCCCTGGGCCTGGCCGGTAGCGCACCGCTCACCGGGGAAATCGCCAAGCAGCTCGGCATCCAGGAC
TTCCAGCTGGACACCGAGGGCACCGGCAACAGCACCAGCGTGGTCGCCAGCGGGAATATCACCGACAAGCTC
AGCCTGCGCTATGGTGTTGGAGTGTTCGAACCGGCAAATACCATCGCCTTGCGCTACCAGTTGACCAAACGC
CTCTATCTCGAAGCGGCGAGCGGCCTGGCCAGTTCGCTGGACCTGTTCTTCAAGCGCGATTTCTGA

Translation:

MKALKITLLAIVGLLLALLLGLAALLGTQAGSAWLLGRVPGLQVSGFEGRLGGAWQAQRLSWAQDGTQLVVE
RPELRWSPACLAGLRLCLQRVAAERVALDLPPSGDSADSGPISLPTLKLPLSIELGEVAVGSFLLDGNQQVA
ELKLAAHWLADGLHIDSLTARGFGLDLALQGRLQPSGDWPLQAEATLGLPAPEGKPWKLAVQVGGELQQALT
LKGRSSGYLDGSLEGQLQALAENLPARLLIRADGFKGAAGLPDTLTLNAIQLDAGGDLKSGYLIRGGASLPG
EGGAVALSLDGRVDAQGADIRQLRLDAGGEQRLELVGRLDWRESLAADATLDWKDFPWLRLYPLAEPPPVTL
KTFKAEVHYQDQRYLGNFSAAASGPAGDFTLASPVSGDLVQLNLPSLQLRAGQGQAEGRVTLRFDNGVAWDT
ALQLSELNPAYWVAELPGSLAGPLRSQGSVRDERLALGVDLDVKGRLRGQPALFQARAEGEGQRWTLGNLDL
RLGDNKVQGSGALDQRLQGRLDIALNRLGQLWPQLFGRLDGRLDLAGSLAAPQGRLNLKGQQIAYAEQRIAG
LDLQANLDARQNGTLALVASGLRSGETDLGLFKANARGDQHRQQLELDLQGALLKLGLAFDGQLERGNWRGR
LARGELSSGGQDWKLQQPARLERLADGRVNFGAHCWVSGGASLCGGEQRLLPEPRLRYTLRDFPLDSLKQWF
PEDFAWQGKLNGDLQLDVPARGPSGVVSLDAGSGTLRLRDQGQWVDVGYDSLRLESRLAPNRVDTSLDFRGP
KLGELRVQAQIDPRPASKPLSGEFSLAGLDLSVARPFVPMVEKLQGRLNGSGRLSGGLLAPRVDGRVTLSDG
NIGGGELPTSFENLSLDARIAGESLELGGGWRSGRYGQGSLSGNLSWGEALNVALNIRGNRLPVVVDPYAQL
EVEPDLKIGMAGQELAISGKVLVPRGDITIRQLPPSTVKVSDDAVIVGSEQPEQQPLKMKMDIDVEVGQDKL
AFSGFGLSAELAGHLHIGDNLDTRGELNLNKGRYRAYGQRLTIRRARLFFAGPIDQPYLDIEAIRRVDDVVA
GLRLTGSAEQPTSAVFSEPAMSQEQALSYLVLGRPMSTGEDSNMLGEAALALGLAGSAPLTGEIAKQLGIQD
FQLDTEGTGNSTSVVASGNITDKLSLRYGVGVFEPANTIALRYQLTKRLYLEAASGLASSLDLFFKRDF*

AnnotationID:43 GeneID:33

AnnotatorUID: diggins

Modification Date/Time: 2005-03-06 21:09:45

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2542

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14035

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17211

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33100

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 33_cdd.html

URL:

Homologs By Global Alignment

Gene ID:33

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

69 PA2542_tr translation of PA2542 1221 99.34 99.59 0 6183.0

11330 gb|AAG05930.1|AE004682_2 (AE004682) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 1221 99.26 99.59 0 6180.0

11331 gb|AAN68501.1|AE016482_3 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 1224 61.84 76.87 3 3968.0

11332 gb|AAO56251.1| (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 1229 59.72 76.72 8 3895.0

GC ORFID: `43035`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2542`	Glimmer Score:
Start: `2200365`	Stop: `2196700`
Length: `3666`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2542 translation of PA2542`	Homolog Bit Score `2386.0`
Other Homologs: `psyr_15may02_Scaffold9_revised_gene8131 (ORF: BLASTX 1511.0), t_PA2542 (ORF: GLIMMER)`
GC ORF Sequence
GTGAAGGCGCTGAAGATCACCCTGCTGGCCATAGTCGGGCTGCTCCTCGCGCTGCTCCTGGGACTCGCTGCG CTGCTCGGCACCCAGGCCGGCAGCGCCTGGCTGCTCGGCCGCGTGCCGGGCCTGCAGGTCAGCGGCTTCGAG GGTCGCCTCGGTGGCGCCTGGCAGGCACAGCGGCTGTCCTGGGCGCAGGACGGTACGCAACTGGTCGTCGAG CGGCCGGAACTGCGCTGGTCGCCGGCTTGCCTGGCGGGGCTGCGCCTGTGCCTGCAGCGGGTGGCCGCCGAG CGGGTCGCGCTGGACCTGCCGCCGAGCGGCGACAGCGCCGACAGCGGGCCGATCAGCCTGCCGACGCTGAAA CTGCCGCTGAGCATCGAACTCGGCGAAGTGGCGGTCGGCAGCTTCCTGCTCGACGGCAACCAGCAGGTCGCC GAACTCAAGCTGGCGGCCCATTGGCTGGCCGACGGCCTGCACATCGACTCGCTGACGGCGCGGGGCTTCGGC CTGGACCTGGCGCTCCAGGGGCGCTTGCAGCCGAGCGGCGACTGGCCCTTGCAGGCCGAAGCCACGCTCGGC CTGCCCGCTCCCGAAGGCAAGCCGTGGAAGCTGGCCGTCCAGGTCGGCGGTGAGCTGCAGCAGGCGCTGACC CTGAAAGGCCGCAGCAGCGGTTACCTGGACGGCAGCCTGGAAGGACAGTTGCAGGCGCTGGCGGAAAACCTG CCGGCACGATTGCTGATCCGCGCCGACGGTTTCAAGGGTGCGGCCGGACTACCGGACACCTTGACCCTGAAT GCCATCCAGCTCGATGCCGGCGGCGATCTCAAGAGCGGTTACCTGATCCGCGGCGGCGCCAGCCTGCCGGGC GAGGGCGGGGCGGTGGCGTTGAGCCTGGACGGGCGGGTCGACGCCCAGGGCGCGGATATCCGCCAACTGCGC CTGGACGCTGGCGGCGAGCAGCGCCTGGAGCTGGTCGGACGCCTGGACTGGCGCGAAAGCCTGGCCGCCGAC GCGACCCTGGACTGGAAGGATTTCCCCTGGCTGCGCCTGTATCCGCTGGCGGAGCCGCCGCCGGTGACGCTG AAGACCTTCAAGGCGGAAGTGCATTACCAGGACCAGCGCTACCTGGGCAATTTCAGCGCGGCGGCGAGCGGT CCGGCGGGCGACTTCACGCTGGCCAGCCCGGTGTCCGGCGACCTCGTCCAGCTCAACCTGCCGTCGCTGCAG CTCCGCGCCGGGCAAGGCCAGGCCGAGGGGCGGGTGACGTTGCGTTTCGACAATGGCGTGGCTTGGGATACC GCCCTGCAGCTCAGCGAACTGAACCCGGCGTACTGGGTCGCCGAGCTGCCGGGTTCACTGGCCGGTCCCTTG CGCAGCCAGGGAAGTGTTCGCGACGAGCGACTGGCGTTGGGCGTGGATCTCGACGTCAAGGGTCGCCTGCGC GGCCAGCCGGCGCTATTCCAGGCGCGCGCCGAAGGCGAGGGGCAGCGCTGGACGCTGGGCAACCTCGACCTG CGCCTGGGGGATAACAAGGTGCAGGGCAGCGGGGCGCTCGACCAGCGCCTGCAAGGCCGCCTGGACATCGCC CTGAACCGTCTCGGCCAGCTTTGGCCGCAACTCTTCGGTCGCCTCGACGGACGCCTCGACCTGGCTGGCAGC CTCGCGGCGCCGCAAGGCAGGCTGAACCTCAAGGGACAGCAGATCGCCTACGCCGAGCAGCGCATCGCCGGC CTCGACCTGCAGGCGAACCTCGATGCCCGGCAGAACGGCACCCTGGCACTGGTCGCTTCCGGCCTGCGCAGC GGCGAAACCGATCTCGGCCTGTTCAAGGCCAATGCCCGCGGCGACCAACACCGCCAGCAACTGGAACTGGAC CTGCAAGGTGCCTTGCTCAAGCTCGGCCTGGCCTTCGACGGGCAGCTGGAGCGCGGCAACTGGCGCGGTCGC CTGGCGCGCGGCGAGTTGAGCAGCGGCGGCCAGGACTGGAAGCTACAGCAGCCGGCGCGCCTGGAGCGGTTG GCCGACGGCAGGGTCAATTTCGGCGCACATTGCTGGGTATCCGGCGGCGCCAGCCTCTGCGGCGGCGAGCAG CGCCTGCTGCCCGAGCCGCGGCTGCGCTATACCTTGCGCGACTTCCCGCTGGACAGCCTGAAGCAATGGTTC CCCGAGGATTTCGCCTGGCAGGGCAAGCTGAACGGCGACCTGCAACTGGACGTTCCGGCCCGCGGCCCGAGC GGCGTGGTCAGCCTGGACGCCGGCAGCGGTACGCTGCGCCTGCGCGACCAGGGCCAGTGGGTCGACGTCGGC TACGACAGCCTGCGCCTGGAGAGCCGGCTGGCGCCCAACCGCGTCGATACCTCCCTCGACTTCCGCGGACCG AAGCTCGGCGAGTTGCGGGTGCAGGCGCAGATCGACCCGCGCCCGGCGAGCAAGCCGCTGAGCGGCGAGTTC AGCCTGGCCGGCCTCGACCTGTCGGTGGCGCGCCCGTTCGTGCCGATGGTGGAGAAACTGCAAGGCAGGCTG AACGGCAGCGGCCGGCTGTCCGGCGGCCTGCTGGCGCCGCGGGTCGACGGACGGGTGACGCTGAGCGACGGC AACATCGGCGGCGGCGAGCTGCCGACCAGCTTCGAGAACCTTTCCCTCGACGCTCGCATCGCTGGCGAAAGC CTGGAACTCGGCGGCGGCTGGCGCAGCGGCAGGTACGGCCAGGGCAGCCTGTCCGGCAACCTGAGCTGGGGC GAGGCGCTGAACGTCGCCCTGAACATTCGTGGCAACCGCCTGCCGGTGGTGGTCGATCCCTATGCGCAACTG GAGGTGGAACCGGACCTGAAGATCGGCATGGCCGGCCAGGAGCTGGCGATCTCCGGCAAGGTCCTGGTGCCG CGTGGCGACATCACCATCCGCCAGTTGCCGCCATCGACGGTCAAGGTCTCCGACGACGCGGTGATCGTCGGC TCCGAGCAGCCCGAGCAGCAGCCGCTGAAGATGAAGATGGACATCGATGTCGAGGTCGGCCAGGACAAGCTG GCGTTCTCCGGCTTCGGCCTCAGCGCCGAACTGGCAGGCCACCTGCACATCGGCGACAACCTGGATACCCGC GGCGAGCTGAACCTGAACAAGGGCCGCTATCGTGCCTACGGCCAGCGCCTGACGATCCGTAGGGCGCGGCTG TTCTTCGCCGGACCGATCGACCAGCCGTACCTGGATATCGAGGCGATCCGCCGGGTCGACGATGTGGTCGCC GGCCTGCGCCTGACCGGCAGCGCCGAGCAGCCGACCAGCGCGGTATTCTCCGAACCGGCGATGAGCCAGGAG CAGGCGCTGTCCTACCTGGTGCTGGGGCGGCCGATGAGCACCGGCGAAGACAGCAACATGCTCGGCGAGGCG GCCCTGGCCCTGGGCCTGGCCGGTAGCGCACCGCTCACCGGGGAAATCGCCAAGCAGCTCGGCATCCAGGAC TTCCAGCTGGACACCGAGGGCACCGGCAACAGCACCAGCGTGGTCGCCAGCGGGAATATCACCGACAAGCTC AGCCTGCGCTATGGTGTTGGAGTGTTCGAACCGGCAAATACCATCGCCTTGCGCTACCAGTTGACCAAACGC CTCTATCTCGAAGCGGCGAGCGGCCTGGCCAGTTCGCTGGACCTGTTCTTCAAGCGCGATTTCTGA