ViewGene
Locus Name:
GeneID:
Location:

GeneID:3297
TrivialName: PA14_52250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52250
PAO1 Ortholog Locus:PA0929
Sequence Length:720
Protein Length:239
Start: 4635619
Stop: 4634900
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04318.1|AE004527_5 (AE004527) two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 238/239 (99%), Positives = 238/239 (99%)
Sequence:
ATGTTCCCATCCCTGACGCCCGACCCCCGACTGCTGGCCATCGAGGACGATCCGACACTGGGCGCACATCTG
TTCCAGCACCTCAATGGCAGCGGTTTCGAGGTGACCTGGTGCCGAGACGGGGAAGAGGGGTTGGCGGCTGCG
CGCAGCGGCGCCTATGACCTGATCCTGATGGACATCATGCTGCCGGGGCGCGATGGCCTCGAGATTCTTCGC
CAACTCCGCCAGGAGCAGGCGCTGCCGGTGATCCTGATGTCGGCCCTGGGCGCCGAGCAGGACCGCATCGCC
GGGTTCAGCCAGGGCGCCGACGATTATCTGCCGAAGCCTTTCAGCCTGGCCGAGCTGCGGGTACGCATCGAT
GCCATCCTGCGCCGGATCGCCCTGGAGCGGGGGGGCGCGCCGGGCCGCTGCGCCGAACCGCTGGCGCGGCCC
TCGCTGCAATTCTCTGCCGATGTCTGCGATGTCAGCCTTGGCGAGCGGTTCGCCGGCCTGACGCCGACCGAA
TACCGCCTGCTGGAAACCTTCCTCGCCGCGGAAGGCGAGACCCTGACCAAGGCCTTCCTTTACCAGCATGTC
CTGCACCGCGGTCATACCCAGCATGATCGCAGCCTGGACATGCACGTCAGTCACCTGCGGCGCAAGCTGCAA
CGCCTCGGTTACGCCGGTCACCAGTTGCATACCGTCTGGGGCAAGGGTTACGTCCTGACACCGGCGCCATGA
Translation:
MFPSLTPDPRLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLEILR
QLRQEQALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIALERGGAPGRCAEPLARP
SLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFLYQHVLHRGHTQHDRSLDMHVSHLRRKLQ
RLGYAGHQLHTVWGKGYVLTPAP*
AnnotationID:3305GeneID:3297
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 17:05:09
Gene Name:
Confidence Code:2
GeneProduct:two-component response regulator
Cell Localization:()
Synonyms:PA0929, pirR 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745, cd00156, pfam00486
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Two-component System 
Homology:






 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and 
a winged-helix DNA-binding domain. Score: 197, 1e-51
cd00156, REC, Signal receiver domain. Score: 116, 2e-27
pfam00486, Trans_reg_C, Transcriptional regulatory protein, C






   
Genomic Context:
pirRSA (Pseudomonas aeruginosa) 






   
Comment:


















    ReferenceID:6597




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23739




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3297
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5292
                           PA0929_tr
                           translation of PA0929
                           239
                           99.58
                           99.58
                           0
                           1242.0
     

     
     
148304
                           gb|AAG04318.1|AE004527_5
                           (AE004527) two-component response regulator [Pseudomonas aeruginosa PAO1]
                           239
                           99.58
                           99.58
                           0
                           1242.0
     

     
     
148305
                           gb|AAC06222.1|
                           (AF051692) response regulator [Pseudomonas aeruginosa]
                           239
                           98.74
                           98.74
                           0
                           1230.0
     

     
     
148306
                           gb|AAN67272.1|AE016353_12
                           (AE016780) DNA-binding response regulator [Pseudomonas putida KT2440]
                           277
                           50.90
                           62.81
                           43
                           697.0
     

     
     
148309
                           gb|AAN66161.1|AE016244_2
                           (AE016776) transcriptional regulator PfeR, putative [Pseudomonas putida KT2440]
                           250
                           48.00
                           60.40
                           31
                           539.0
     

     






      

          
GC ORFID: 46299How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0929Glimmer Score: 

          
Start: 318288Stop: 319007

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0929 translation of PA0929Homolog Bit Score 483.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2003 (ORF: BLASTX 135.0), t_PA0929 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCCATCCCTGACGCCCGACCCCCGACTGCTGGCCATCGAGGACGATCCGACACTGGGCGCACATCTG 
TTCCAGCACCTCAATGGCAGCGGTTTCGAGGTGACCTGGTGCCGAGACGGGGAAGAGGGGTTGGCGGCTGCG 
CGCAGCGGCGCCTATGACCTGATCCTGATGGACATCATGCTGCCGGGGCGCGATGGCCTCGAGATTCTTCGC 
CAACTCCGCCAGGAGCAGGCGCTGCCGGTGATCCTGATGTCGGCCCTGGGCGCCGAGCAGGACCGCATCGCC 
GGGTTCAGCCAGGGCGCCGACGATTATCTGCCGAAGCCTTTCAGCCTGGCCGAGCTGCGGGTACGCATCGAT 
GCCATCCTGCGCCGGATCGCCCTGGAGCGGGGGGGCGCGCCGGGCCGCTGCGCCGAACCGCTGGCGCGGCCC 
TCGCTGCAATTCTCTGCCGATGTCTGCGATGTCAGCCTTGGCGAGCGGTTCGCCGGCCTGACGCCGACCGAA 
TACCGCCTGCTGGAAACCTTCCTCGCCGCGGAAGGCGAGACCCTGACCAAGGCCTTCCTTTACCAGCATGTC 
CTGCACCGCGGTCATACCCAGCATGATCGCAGCCTGGACATGCACGTCAGTCACCTGCGGCGCAAGCTGCAA 
CGCCTCGGTTACGCCGGTCACCAGTTGCATACCGTCTGGGGCAAGGGTTACGTCCTGACACCGGCGCCATGA