ViewGene

Locus Name:
GeneID:
Location:

GeneID:3296
TrivialName: PA14_59130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59130
PAO1 Ortholog Locus:
Sequence Length:729
Protein Length:242
Start: 5265022
Stop: 5265750
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84222.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 242/242 (100%), Positives = 242/242 (100%)
Sequence:
ATGGCTGAAACCCATCGGCTTCAGATCGGCTCTCTCCGCAGCGATGTCGCTCTGACGCTTCACACCTATCAC
GCCGCCCGCATCTGGACCGGCCGGCAGAAGTCGGATGCCAAGCACAGCATCCTCGGCCTCTCCGGCTTCTGC
GCATACGTGAATCGCATGCACCGCGGGGCAGCACAGGACGATCCGTACTCCGACTGGTGGCTGGTTCAGATC
GAAGAGAAAGTCGAGAGCTGCCAAGCCGCACTCGAGGCCATCGACCAGCGACTGGATGACGTCATGGCCAAG
CTGCCCGCGACCCTCGATATCTCCGAGAACCTGTCCGTTACACCGGTCAAGGTCCCGTTGTTCATCTCCAAC
CCTCTCGGCTTCAAGGCAGTCTATCTCCTGACCAACTACGACGAACTCGCCCGTCGAATCCTGCTGGCCCAG
CACGTCGGGCTGGTCGGTCGCCGCGACATGGAGGTCTGGCTCGACGAAGGTGCGTCGGTGCTGCGAAGCCTG
TTTGGTCTGGCCCAGAGCTACCAGTTCTCGGGCGCCACTCGCGACGACTTCGCCGCAAACAATGCTCGCGCC
GAAGCCGCGCGGAAGATGTACGAGAAGTTCGGCGAGATCCCGCAGGACATCCTGGAGGGCACTCGACGCTCG
AACTTCGCTCCGCCGATCACCCGGGGCCGCTCTGACGGTGATGCCGATGATGACGCTGACCGTGTCGAACTC
GAGGACTGA
Translation:
MAETHRLQIGSLRSDVALTLHTYHAARIWTGRQKSDAKHSILGLSGFCAYVNRMHRGAAQDDPYSDWWLVQI
EEKVESCQAALEAIDQRLDDVMAKLPATLDISENLSVTPVKVPLFISNPLGFKAVYLLTNYDELARRILLAQ
HVGLVGRRDMEVWLDEGASVLRSLFGLAQSYQFSGATRDDFAANNARAEAARKMYEKFGEIPQDILEGTRRS
NFAPPITRGRSDGDADDDADRVELED*
AnnotationID:3304GeneID:3296
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6595
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23737
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3296

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
148297 gb|AAP84222.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 242 99.99 99.99 0 1247.0
148298 emb|CAE92950.1| (AJ617740) hypothetical protein [Pseudomonas putida] 262 50.76 70.22 23 690.0
148299 emb|CAD60670.1| (AJ536665) hypothetical protein [Pseudomonas sp. B13] 262 50.76 70.22 23 690.0
148300 gb|AAN62197.1|AF440523_104 (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa] 266 48.49 66.91 27 673.0
148301 gb|AAN62320.1|AF440524_107 (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa] 266 48.49 65.78 27 660.0
GC ORFID: 46298How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL097Glimmer Score:
Start: 4528701Stop: 4529429
Length: 729
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL097 242 Homolog: XF1780 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84588) translation of RL097Homolog Bit Score 484.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1576 (ORF: BLASTX 290.0), t_RL097 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGAAACCCATCGGCTTCAGATCGGCTCTCTCCGCAGCGATGTCGCTCTGACGCTTCACACCTATCAC
GCCGCCCGCATCTGGACCGGCCGGCAGAAGTCGGATGCCAAGCACAGCATCCTCGGCCTCTCCGGCTTCTGC
GCATACGTGAATCGCATGCACCGCGGGGCAGCACAGGACGATCCGTACTCCGACTGGTGGCTGGTTCAGATC
GAAGAGAAAGTCGAGAGCTGCCAAGCCGCACTCGAGGCCATCGACCAGCGACTGGATGACGTCATGGCCAAG
CTGCCCGCGACCCTCGATATCTCCGAGAACCTGTCCGTTACACCGGTCAAGGTCCCGTTGTTCATCTCCAAC
CCTCTCGGCTTCAAGGCAGTCTATCTCCTGACCAACTACGACGAACTCGCCCGTCGAATCCTGCTGGCCCAG
CACGTCGGGCTGGTCGGTCGCCGCGACATGGAGGTCTGGCTCGACGAAGGTGCGTCGGTGCTGCGAAGCCTG
TTTGGTCTGGCCCAGAGCTACCAGTTCTCGGGCGCCACTCGCGACGACTTCGCCGCAAACAATGCTCGCGCC
GAAGCCGCGCGGAAGATGTACGAGAAGTTCGGCGAGATCCCGCAGGACATCCTGGAGGGCACTCGACGCTCG
AACTTCGCTCCGCCGATCACCCGGGGCCGCTCTGACGGTGATGCCGATGATGACGCTGACCGTGTCGAACTC
GAGGACTGA