ViewGene
Locus Name:
GeneID:
Location:

GeneID:3293
TrivialName: PA14_17650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17650
PAO1 Ortholog Locus:PA3606
Sequence Length:717
Protein Length:238
Start: 1517189
Stop: 1517905
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06994.1|AE004781_2 (AE004781) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/238 (99%), Positives = 237/238 (99%)
Sequence:
ATGAGCCATGCCGTTTCCCGCTTGCGCCAGGAGCGCCTGGCGCGCAGCCTGAAACCCTTCGTCGCGCGCGGT
TCGCGCATGCCGCGCTGCGAAGGCTGTCGGCTGCTGCCGAGCTATTGCATGTGCGCCTGGCGGCCGCGGGTC
GAGGCGCGCGCCGGCATGTGCCTGGTCATGCACGACATCGAGGCGCTGAAACCGACCAACACCGGCTGGCTG
ATCGCCGATACCGTGGCCGACACCTTCGCCTTCGGCTGGTCGCGCACCGAGGTCGACCCGCGCTTGCTGGAG
TTGCTGGCCGACCCGCAGTGGCAGCCATACCTGGTGTTCCCCGGCGAATACGTGGCGGCGGAGCGGGTGGTG
AACGAGGTCGCCCCGCAGGTGGAAGGCAAGCGACCGCTGTTCATCCTGCTCGACGCGACCTGGACCGAGGCG
CGCAAGATGTTCCGCAAGAGTCCCTACCTGGAGCCGTTCCCGGTGCTCAGCCTGCTGCCCGAGCAGCTCTCG
CGCTATCGCCTGCGTCGCTCGACCCGTGGCGAGCACCTGTGCACCGCCGAAGTGGCGGCGCTGTGCCTGGAG
CTGGCTGGCGACGAGGCCGCGGGCGAGGCGCTCGGCGCCTACCTGGAGGTGTTCAGCGAGCGTTATCTGGGC
GCCAAGCGGCACATTCCGCTGGACGAGGCCAGCCCGGCGCACCGTGCCCTGGCGCCGTTCCGTGGCTGA
Translation:
MSHAVSRLRQERLARSLKPFVARGSRMPRCEGCRLLPSYCMCAWRPRVEARAGMCLVMHDIEALKPTNTGWL
IADTVADTFAFGWSRTEVDPRLLELLADPQWQPYLVFPGEYVAAERVVNEVAPQVEGKRPLFILLDATWTEA
RKMFRKSPYLEPFPVLSLLPEQLSRYRLRRSTRGEHLCTAEVAALCLELAGDEAAGEALGAYLEVFSERYLG
AKRHIPLDEASPAHRALAPFRG*
AnnotationID:3301GeneID:3293
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3606
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6589




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31935




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3293_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3293
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5289
                           PA3606_tr
                           translation of PA3606
                           238
                           99.57
                           99.57
                           0
                           1247.0
     

     
     
148263
                           gb|AAG06994.1|AE004781_2
                           (AE004781) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           238
                           99.57
                           99.57
                           0
                           1247.0
     

     
     
148264
                           gb|AAO57486.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           238
                           70.58
                           79.41
                           2
                           888.0
     

     
     
148265
                           gb|AAN67255.1|AE016352_8
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           238
                           69.32
                           80.67
                           2
                           877.0
     

     
     
148266
                           gb|AAF64234.1|AF249735_2
                           (AF249735) unknown [Pseudomonas putida]
                           238
                           68.90
                           80.25
                           2
                           877.0
     

     






      

          
GC ORFID: 46295How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3606Glimmer Score: 

          
Start: 3436748Stop: 3436032

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3606 translation of PA3606Homolog Bit Score 484.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4661 (ORF: BLASTX 343.0), t_PA3606 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCATGCCGTTTCCCGCTTGCGCCAGGAGCGCCTGGCGCGCAGCCTGAAACCCTTCGTCGCGCGCGGT 
TCGCGCATGCCGCGCTGCGAAGGCTGTCGGCTGCTGCCGAGCTATTGCATGTGCGCCTGGCGGCCGCGGGTC 
GAGGCGCGCGCCGGCATGTGCCTGGTCATGCACGACATCGAGGCGCTGAAACCGACCAACACCGGCTGGCTG 
ATCGCCGATACCGTGGCCGACACCTTCGCCTTCGGCTGGTCGCGCACCGAGGTCGACCCGCGCTTGCTGGAG 
TTGCTGGCCGACCCGCAGTGGCAGCCATACCTGGTGTTCCCCGGCGAATACGTGGCGGCGGAGCGGGTGGTG 
AACGAGGTCGCCCCGCAGGTGGAAGGCAAGCGACCGCTGTTCATCCTGCTCGACGCGACCTGGACCGAGGCG 
CGCAAGATGTTCCGCAAGAGTCCCTACCTGGAGCCGTTCCCGGTGCTCAGCCTGCTGCCCGAGCAGCTCTCG 
CGCTATCGCCTGCGTCGCTCGACCCGTGGCGAGCACCTGTGCACCGCCGAAGTGGCGGCGCTGTGCCTGGAG 
CTGGCTGGCGACGAGGCCGCGGGCGAGGCGCTCGGCGCCTACCTGGAGGTGTTCAGCGAGCGTTATCTGGGC 
GCCAAGCGGCACATTCCGCTGGACGAGGCCAGCCCGGCGCACCGTGCCCTGGCGCCGTTCCGTGGCTGA