ViewGene
Locus Name:
GeneID:
Location:

GeneID:3292
TrivialName: PA14_24060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24060
PAO1 Ortholog Locus:PA3098
Sequence Length:714
Protein Length:237
Start: 2088952
Stop: 2089665
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06486.1|AE004734_4 (AE004734) general secretion pathway protein J [Pseudomonas aeruginosa PAO1]
Identities = 237/237 (100%), Positives = 237/237 (100%)
Sequence:
ATGAGGCTACAGCGGGGCTTCACCCTGCTCGAGCTGCTGATCGCCATCGCCATCTTCGCCCTGCTGGCCCTG
GCCACCTACCGCATGTTCGACAGCGTGATGCAGACCGACCAGGCGACTCGCGTGCAGGAGCAGCGCATGCGC
GAGCTGGTGCGGGCGATGGGCGCCCTGGAGCGCGACCTGACCCAGGCGGTCGAACGTCCGGTACGCGACGAA
CTGGGCGATAACCGTGGCGCCTTCCTCAGCGAGGGCGAGAACGACCAGATCGTCGAATTCACCCGTGGCGGC
TGGCGCAACCCGCTCGGCCAGGCGCGCTCGCGCCTGCAGCGGGTGCGCTGGTCGCTGTCCGGGGAGACCCTC
GAACGCCGCTACTGGCTGGTTCTGGACCGCGCCCAGGACAGCAAGCCACGGGTGCAGCAGGTGCTGGACGGG
GTTACCGCGCTGAGCTGGCGCTTCCTCGACAAGGAGCACAACTGGCAGGGCCACTGGCCGACCGACGAAGGC
AGCGAGGAGGAGCGCCTGGAAAGCCTGCCGCTGGCGGTGGAGATGACCCTGGAGCACCGCCACTACGGCAAG
CTGGTGCGCGTCTGGCGTCTGCTCGATCCGCCGCTCAAGCAGGACCAGCCGCAGGGCCAGCCGGGCGGCGAG
AATGGCGAGAACGGCGAGGGCGGGGTGCCGCAGCCGCCGGAAGGCATGCCGGGGGCGCCGGAATGA
Translation:
MRLQRGFTLLELLIAIAIFALLALATYRMFDSVMQTDQATRVQEQRMRELVRAMGALERDLTQAVERPVRDE
LGDNRGAFLSEGENDQIVEFTRGGWRNPLGQARSRLQRVRWSLSGETLERRYWLVLDRAQDSKPRVQQVLDG
VTALSWRFLDKEHNWQGHWPTDEGSEEERLESLPLAVEMTLEHRHYGKLVRVWRLLDPPLKQDQPQGQPGGE
NGENGEGGVPQPPEGMPGAPE*
AnnotationID:3300GeneID:3292
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 20:08:37
Gene Name:xcpW
Confidence Code:1
GeneProduct:general secretion pathway protein J
Cell Localization:()
Synonyms:pddD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name: PilD-dependent protein PddD
Functional Category Confidence Code:5
COGs:pfam02501,COG4795
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC83361.1| (AF092918) outer membrane secretion protein W [Pseudomonas
           alcaligenes]
          Length = 227

 Score =  256 bits (655), Expect = 6e-68
 Identities = 136/227 (59%), Positives = 157/227 (69%), Gaps = 5/227 (2%)






 
Structural Features:
pfam02501, GSPII_IJ, Bacterial type II secretion system protein I/J. 
CD-Length = 114 residues, 100.0% aligned
Score =  105 bits (263), Expect = 5e-24
Identities = 48/136 (35%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

COG4795, PulJ, Type II secretory pathway, component PulJ 
[Intracellular trafficking and secretion]
CD-Length = 194 residues,  97.4% aligned
Score =  145 bits (368), Expect = 3e-36
Identities = 67/203 (33%), Positives = 96/203 (47%), Gaps = 16/203 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6587




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23729




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32426




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3292_cdd.html


    		




 
URL:

















    ReferenceID:33455




  
Author/Investigator(s):
        Lu HM, Motley ST, Lory S.





  
Title:
        Interactions of the components of the general secretion pathway: role of Pseudomonas aeruginosa type IV pilin subunits in complex formation and extracellular protein secretion.




  
PubMed:
        9282737


MedLine:
        




    
Source:
Mol Microbiol. 1997 Jul;25(2):247-59.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9282737

















    ReferenceID:33456




  
Author/Investigator(s):
        Nunn DN, Lory S.





  
Title:
        Cleavage, methylation, and localization of the Pseudomonas aeruginosa export proteins XcpT, -U, -V, and -W.




  
PubMed:
        8331069


MedLine:
        




    
Source:
J Bacteriol. 1993 Jul;175(14):4375-82.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8331069









           
Homologs By Global Alignment 

           

       



     
Gene ID:3292
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5288
                           PA3098_tr
                           translation of PA3098
                           237
                           99.99
                           99.99
                           0
                           1247.0
     

     
     
148258
                           gb|AAG06486.1|AE004734_4
                           (AE004734) general secretion pathway protein J [Pseudomonas aeruginosa PAO1]
                           237
                           99.99
                           99.99
                           0
                           1247.0
     

     
     
148259
                           emb|CAA44538.1|
                           (X62666) secretion protein XcpW [Pseudomonas aeruginosa]
                           237
                           99.99
                           99.99
                           0
                           1247.0
     

     
     
148260
                           gb|AAA25949.1|
                           (M80792) PilD-dependent protein [Pseudomonas aeruginosa]
                           237
                           99.57
                           99.57
                           0
                           1241.0
     

     
     
148261
                           gb|AAC83361.1|
                           (AF092918) outer membrane secretion protein W [Pseudomonas alcaligenes]
                           238
                           58.82
                           67.64
                           12
                           662.0
     

     






      

          
GC ORFID: 46294How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3098Glimmer Score: 

          
Start: 2864979Stop: 2864266

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3098 translation of PA3098Homolog Bit Score 484.0

          
Other Homologs:  t_PA3098 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGCTACAGCGGGGCTTCACCCTGCTCGAGCTGCTGATCGCCATCGCCATCTTCGCCCTGCTGGCCCTG 
GCCACCTACCGCATGTTCGACAGCGTGATGCAGACCGACCAGGCGACTCGCGTGCAGGAGCAGCGCATGCGC 
GAGCTGGTGCGGGCGATGGGCGCCCTGGAGCGCGACCTGACCCAGGCGGTCGAACGTCCGGTACGCGACGAA 
CTGGGCGATAACCGTGGCGCCTTCCTCAGCGAGGGCGAGAACGACCAGATCGTCGAATTCACCCGTGGCGGC 
TGGCGCAACCCGCTCGGCCAGGCGCGCTCGCGCCTGCAGCGGGTGCGCTGGTCGCTGTCCGGGGAGACCCTC 
GAACGCCGCTACTGGCTGGTTCTGGACCGCGCCCAGGACAGCAAGCCACGGGTGCAGCAGGTGCTGGACGGG 
GTTACCGCGCTGAGCTGGCGCTTCCTCGACAAGGAGCACAACTGGCAGGGCCACTGGCCGACCGACGAAGGC 
AGCGAGGAGGAGCGCCTGGAAAGCCTGCCGCTGGCGGTGGAGATGACCCTGGAGCACCGCCACTACGGCAAG 
CTGGTGCGCGTCTGGCGTCTGCTCGATCCGCCGCTCAAGCAGGACCAGCCGCAGGGCCAGCCGGGCGGCGAG 
AATGGCGAGAACGGCGAGGGCGGGGTGCCGCAGCCGCCGGAAGGCATGCCGGGGGCGCCGGAATGA