ViewGene
Locus Name:
GeneID:
Location:

GeneID:3291
TrivialName: PA14_43840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43840
PAO1 Ortholog Locus:PA1597
Sequence Length:726
Protein Length:241
Start: 3904000
Stop: 3903275
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04986.1|AE004587_10 (AE004587) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 240/241 (99%), Positives = 241/241 (100%)
Sequence:
ATGAGTGAGATTCGTGTAGAGCCGGTCGCCTACGACATCGATGGGCAGCCGTACGAAGGTCAACTGGTGTAC
GACGCCAGCCACGCGGGACCGCGCCCGGGCCTGCTGATGGCGCCGAACTGGATGGGCGTGAGCGCCGCCGCG
CTGGACATCGCCCGGCAGGTCGCCGGCCGTGGGCACGTGGTGCTGGTCGCGGACCTCTACGGCAGGGACGTG
CGTCCGCAGAACGGCGACGAGGCGGGCGCGGCGATGATGCCGCTGAAGAACGACCGGGCCCTGCTGCGCAAG
CGCATGCAGGCAGCGCTGGCGGCCTTGCGCGGACAGGCGCTCGCGGCTGTCGATACGACCCGCCAGGCCGCC
TTCGGTTTCTGCTTCGGCGGTTGCTGCGCGCTGGAGCTGGCTCGCGACGGCGCCGAGCTGAAGGCCTTCGTG
TCCTTCCATGGCACCCTGGATACGCCGGACCCGGCGCATGCCAGGAATATCAAGGGCGCGGTACTGGTCCTC
GACGGCGCCTCCGATCCGCTGGTGCCGCGCGAGCAGTTGCCGGCCTTCGCCAGGGAGATGACCGATGCCGGC
GTCGACTGGCAGCTCACCAGCTACGGCGGCGCGGTGCATTCCTTCACCGATCCGAACGCCAAGGTGCCGGGC
AAGATGCACTATGACGCCAGGACCTCCCGGCGTGCCTTCCAGGCGATGGACGACCTGCTGGCGGAAGTCTTC
GCCTGA
Translation:
MSEIRVEPVAYDIDGQPYEGQLVYDASHAGPRPGLLMAPNWMGVSAAALDIARQVAGRGHVVLVADLYGRDV
RPQNGDEAGAAMMPLKNDRALLRKRMQAALAALRGQALAAVDTTRQAAFGFCFGGCCALELARDGAELKAFV
SFHGTLDTPDPAHARNIKGAVLVLDGASDPLVPREQLPAFAREMTDAGVDWQLTSYGGAVHSFTDPNAKVPG
KMHYDARTSRRAFQAMDDLLAEVFA*
AnnotationID:3299GeneID:3291
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 15:03:11
Gene Name:
Confidence Code:3
GeneProduct:putative dienelactone hydrolase family protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0412,pfam01738
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55725.1| (AE016863) dienelactone hydrolase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 242

 Score =  336 bits (862), Expect = 6e-92
 Identities = 167/239 (69%), Positives = 190/239 (79%)

>gb|AAN69759.1|AE016612_5 (AE016789) dienelactone hydrolase family protein [Pseudomonas
           putida KT2440]
          Length = 241

 Score =  323 bits (828), Expect = 5e-88
 Identities = 160/240 (66%), Positives = 190/240 (79%), Gaps = 1/240 (0%)






 
Structural Features:
COG0412, COG0412, Dienelactone hydrolase and related enzymes 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 236 residues,  98.7% aligned
Score =  152 bits (384), Expect = 4e-38
Identities = 78/238 (32%), Positives = 103/238 (43%), Gaps = 8/238 (3%)

pfam01738, DLH, Dienelactone hydrolase family
CD-Length = 216 residues,  95.4% aligned
Score =  133 bits (336), Expect = 2e-32
Identities = 70/214 (32%), Positives = 96/214 (44%), Gaps = 10/214 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6585




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23727




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37304




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3291_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3291
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5287
                           PA1597_tr
                           translation of PA1597
                           241
                           99.58
                           99.99
                           0
                           1246.0
     

     
     
148253
                           gb|AAG04986.1|AE004587_10
                           (AE004587) hypothetical protein PA1597 [Pseudomonas aeruginosa PAO1]
                           241
                           99.58
                           99.99
                           0
                           1246.0
     

     
     
148254
                           gb|AAO55725.1|
                           (AE016863) dienelactone hydrolase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           69.00
                           78.51
                           1
                           861.0
     

     
     
148255
                           gb|AAN69759.1|AE016612_5
                           (AE016789) dienelactone hydrolase family protein [Pseudomonas putida KT2440]
                           242
                           66.11
                           78.51
                           2
                           829.0
     

     
     
148256
                           gb|AAM42009.1|
                           (AE012387) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           251
                           42.23
                           57.76
                           10
                           509.0
     

     






      

          
GC ORFID: 46293How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1597Glimmer Score: 

          
Start: 1049909Stop: 1050634

          
Length: 726


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1597 translation of PA1597Homolog Bit Score 484.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1004 (ORF: BLASTX 332.0), t_PA1597 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGAGATTCGTGTAGAGCCGGTCGCCTACGACATCGATGGGCAGCCGTACGAAGGTCAACTGGTGTAC 
GACGCCAGCCACGCGGGACCGCGCCCGGGCCTGCTGATGGCGCCGAACTGGATGGGCGTGAGCGCCGCCGCG 
CTGGACATCGCCCGGCAGGTCGCCGGCCGTGGGCACGTGGTGCTGGTCGCGGACCTCTACGGCAGGGACGTG 
CGTCCGCAGAACGGCGACGAGGCGGGCGCGGCGATGATGCCGCTGAAGAACGACCGGGCCCTGCTGCGCAAG 
CGCATGCAGGCAGCGCTGGCGGCCTTGCGCGGACAGGCGCTCGCGGCTGTCGATACGACCCGCCAGGCCGCC 
TTCGGTTTCTGCTTCGGCGGTTGCTGCGCGCTGGAGCTGGCTCGCGACGGCGCCGAGCTGAAGGCCTTCGTG 
TCCTTCCATGGCACCCTGGATACGCCGGACCCGGCGCATGCCAGGAATATCAAGGGCGCGGTACTGGTCCTC 
GACGGCGCCTCCGATCCGCTGGTGCCGCGCGAGCAGTTGCCGGCCTTCGCCAGGGAGATGACCGATGCCGGC 
GTCGACTGGCAGCTCACCAGCTACGGCGGCGCGGTGCATTCCTTCACCGATCCGAACGCCAAGGTGCCGGGC 
AAGATGCACTATGACGCCAGGACCTCCCGGCGTGCCTTCCAGGCGATGGACGACCTGCTGGCGGAAGTCTTC 
GCCTGA