ViewGene
Locus Name:
GeneID:
Location:

GeneID:3290
TrivialName: PA14_54260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54260
PAO1 Ortholog Locus:PA0775
Sequence Length:741
Protein Length:246
Start: 4814332
Stop: 4815072
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04164.1|AE004512_7 (AE004512) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 246/246 (100%), Positives = 246/246 (100%)
Sequence:
GTGAGCGAGTCCGATCGCCTGTTCGCCCAACCCCAGCAACGTGTCGCCGACTTCGTGTTCAACGAAGACGTG
GTGCGCGTGTTCCCCGACATGATCAAGCGCTCCGTGCCGGGCTACCCCACCATCGTCGAGAACATCGGCGTA
CTCGGCGCGCAGTTCGCCCAGCCGAACAGCGTGCTCTACGACCTCGGCTGCTCGCTCGGCGCGGTCACCCAG
TCGCTGCGCCGCCACGTCCGCAACGACGGCTGCCGGGTGATCGGGGTGGACAACTCGCACGCGATGATCGAG
CGCTGCAGTGAATACCTGCATGCCCAGGACGCCATGTACCAGGAGCTGCTGCCGGTCGAGCTGATCGAGGCC
GACATTCTCGCCCTGGACCTGCAACCCACCTCGCTGGTGGCGATGAACTTCACCCTGCAGTTCGTCGCCCCC
GACCAGCGCCTCGGCCTGCTGCGCAGGATCCGCCAGGCACTGCTGCCCGGCGGCGCGCTGATCCTCTCGGAG
AAACTGCGCTTCGCCGATGCGCAGGAGCACGCGCTGCTCACCGACCTGCACATCGCCTTCAAGCGTGCCAAC
GGCTACAGCGAGCTGGAGATCGCGCAGAAGCGCAGCGCGCTGGAAAACGTCATGCTCCCCGACACCTTCGAG
GAACACCGTGAACGGCTCCTGGCCGCCGGCTTCAGCCGGGTCAGCCAATGGTTCCAGTGTCTCAACTTCGCC
TCGATGATCGCCCTGCCATGA
Translation:
MSESDRLFAQPQQRVADFVFNEDVVRVFPDMIKRSVPGYPTIVENIGVLGAQFAQPNSVLYDLGCSLGAVTQ
SLRRHVRNDGCRVIGVDNSHAMIERCSEYLHAQDAMYQELLPVELIEADILALDLQPTSLVAMNFTLQFVAP
DQRLGLLRRIRQALLPGGALILSEKLRFADAQEHALLTDLHIAFKRANGYSELEIAQKRSALENVMLPDTFE
EHRERLLAAGFSRVSQWFQCLNFASMIALP*
AnnotationID:3298GeneID:3290
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0775, yecO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Similar to a number of putative methyltransferases.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23725




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3290
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5286
                           PA0775_tr
                           translation of PA0775
                           246
                           99.99
                           99.99
                           0
                           1246.0
     

     
     
148229
                           gb|AAG04164.1|AE004512_7
                           (AE004512) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           246
                           99.59
                           99.99
                           0
                           1243.0
     

     
     
148230
                           gb|AAO57668.1|
                           (AE016871) methyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           247
                           78.94
                           89.06
                           1
                           1012.0
     

     
     
148231
                           gb|AAN67063.1|AE016335_3
                           (AE016779) methyltransferase, putative [Pseudomonas putida KT2440]
                           247
                           78.13
                           87.85
                           1
                           995.0
     

     
     
148232
                           gb|AAF94323.1|
                           (AE004196) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           250
                           53.60
                           70.00
                           8
                           708.0
     

     






      

          
GC ORFID: 46292How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0775Glimmer Score: 

          
Start: 139575Stop: 138835

          
Length: 741


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0775 translation of PA0775Homolog Bit Score 484.0

          
Other Homologs:  t_PA0775 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAGTCCGATCGCCTGTTCGCCCAACCCCAGCAACGTGTCGCCGACTTCGTGTTCAACGAAGACGTG 
GTGCGCGTGTTCCCCGACATGATCAAGCGCTCCGTGCCGGGCTACCCCACCATCGTCGAGAACATCGGCGTA 
CTCGGCGCGCAGTTCGCCCAGCCGAACAGCGTGCTCTACGACCTCGGCTGCTCGCTCGGCGCGGTCACCCAG 
TCGCTGCGCCGCCACGTCCGCAACGACGGCTGCCGGGTGATCGGGGTGGACAACTCGCACGCGATGATCGAG 
CGCTGCAGTGAATACCTGCATGCCCAGGACGCCATGTACCAGGAGCTGCTGCCGGTCGAGCTGATCGAGGCC 
GACATTCTCGCCCTGGACCTGCAACCCACCTCGCTGGTGGCGATGAACTTCACCCTGCAGTTCGTCGCCCCC 
GACCAGCGCCTCGGCCTGCTGCGCAGGATCCGCCAGGCACTGCTGCCCGGCGGCGCGCTGATCCTCTCGGAG 
AAACTGCGCTTCGCCGATGCGCAGGAGCACGCGCTGCTCACCGACCTGCACATCGCCTTCAAGCGTGCCAAC 
GGCTACAGCGAGCTGGAGATCGCGCAGAAGCGCAGCGCGCTGGAAAACGTCATGCTCCCCGACACCTTCGAG 
GAACACCGTGAACGGCTCCTGGCCGCCGGCTTCAGCCGGGTCAGCCAATGGTTCCAGTGTCTCAACTTCGCC 
TCGATGATCGCCCTGCCATGA