ViewGene
Locus Name:
GeneID:
Location:

GeneID:3289
TrivialName: PA14_54820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54820
PAO1 Ortholog Locus:PA0731
Sequence Length:738
Protein Length:245
Start: 4857921
Stop: 4858658
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04120.1|AE004508_5 (AE004508) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 243/245 (99%), Positives = 243/245 (99%)
Sequence:
ATGCCAATCTTCCTCCGTGCCGCCCTGCGCAGGCTGAGCCTGGCGGGCGCCACCCTTTGCGCACTGGCCAGC
GGGCCGGTGTTCGCCATGCCACTTCCCTCCGCCAAGGACCTTCAGAAACTCGCTCCCCAGGCCAGCCTGCCG
ACCCTCGAACTGGCCCTCACCGCCTATGCCTGCGCGAGTGCGAGCCAGGGTGGCGACAACGGCCTGCTGACG
GTGATCGACTACTCGCGGCCGTCGCGCGACAAGCGCCTCTGGGTATTCGACCTGAAGGCCCGCAAGCTGCTC
TTCGAAGAGTGGGTGACCCACGGCAAGAACAGCGGCGATGACCTTGCCACCTCCTTCTCCAACCGGCCGAAC
AGCTACCAGTCGTCGATCGGGCTGTTCCAGACCGGCCAGCTCTATACCGGCAAGCACGGCCAGTCGCTGCGC
CTGGTTGGCCTGGAGCCGGGTTTCAACGACAAGAGCGAAGAACGCGCCATCGTCATGCACTCCGCCGCCTAC
GCCGATCCCAGGGTGGTTCCCGGGCTCGGCCGCCTGGGCCGCAGCCAGGGCTGCCCTGCGGTACGCCCGGCC
GTGGCCGCCCGGCTGATCAACACCCTCAAGCGCGGCAGCTACGTGTTCGCCTACTACCCACAGCCGAAGTGG
CTGGAAACCTCGCGCTTCCTCGCTCCGCAGAGCTGCGCCGTGGCACGTGCGGCACGCACACCGGAAGTCATC
GCCAGCCTGCTCAAGTGA
Translation:
MPIFLRAALRRLSLAGATLCALASGPVFAMPLPSAKDLQKLAPQASLPTLELALTAYACASASQGGDNGLLT
VIDYSRPSRDKRLWVFDLKARKLLFEEWVTHGKNSGDDLATSFSNRPNSYQSSIGLFQTGQLYTGKHGQSLR
LVGLEPGFNDKSEERAIVMHSAAYADPRVVPGLGRLGRSQGCPAVRPAVAARLINTLKRGSYVFAYYPQPKW
LETSRFLAPQSCAVARAARTPEVIASLLK*
AnnotationID:3297GeneID:3289
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0731
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA0731 of PAO1.  Also similar to: gb|AAM41093.1| conserved hypothetical protein
[Xanthomonas campestris pv. campestris str. ATCC 33913]
      Length = 246
 Score =  214 bits (546), Expect = 8e-55
 Identities = 115/218 (52%), Positives = 144/218 (66%), Gaps = 5/218 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3289
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5285
                           PA0731_tr
                           translation of PA0731
                           245
                           99.18
                           99.18
                           0
                           1245.0
     

     
     
148219
                           gb|AAG04120.1|AE004508_5
                           (AE004508) hypothetical protein PA0731 [Pseudomonas aeruginosa PAO1]
                           245
                           99.18
                           99.18
                           0
                           1245.0
     

     
     
148221
                           gb|AAM36686.1|
                           (AE011816) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           255
                           47.84
                           60.39
                           22
                           541.0
     

     
     
148220
                           gb|AAM41093.1|
                           (AE012283) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           266
                           45.86
                           57.14
                           41
                           551.0
     

     
     
148224
                           gb|AAO90696.1|
                           (AE016963) conserved hypothetical protein [Coxiella burnetii RSA 493]
                           257
                           36.18
                           47.08
                           54
                           374.0
     

     






      

          
GC ORFID: 46291How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0731Glimmer Score: 

          
Start: 95986Stop: 95249

          
Length: 738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0731 translation of PA0731Homolog Bit Score 484.0

          
Other Homologs:  t_PA0731 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAATCTTCCTCCGTGCCGCCCTGCGCAGGCTGAGCCTGGCGGGCGCCACCCTTTGCGCACTGGCCAGC 
GGGCCGGTGTTCGCCATGCCACTTCCCTCCGCCAAGGACCTTCAGAAACTCGCTCCCCAGGCCAGCCTGCCG 
ACCCTCGAACTGGCCCTCACCGCCTATGCCTGCGCGAGTGCGAGCCAGGGTGGCGACAACGGCCTGCTGACG 
GTGATCGACTACTCGCGGCCGTCGCGCGACAAGCGCCTCTGGGTATTCGACCTGAAGGCCCGCAAGCTGCTC 
TTCGAAGAGTGGGTGACCCACGGCAAGAACAGCGGCGATGACCTTGCCACCTCCTTCTCCAACCGGCCGAAC 
AGCTACCAGTCGTCGATCGGGCTGTTCCAGACCGGCCAGCTCTATACCGGCAAGCACGGCCAGTCGCTGCGC 
CTGGTTGGCCTGGAGCCGGGTTTCAACGACAAGAGCGAAGAACGCGCCATCGTCATGCACTCCGCCGCCTAC 
GCCGATCCCAGGGTGGTTCCCGGGCTCGGCCGCCTGGGCCGCAGCCAGGGCTGCCCTGCGGTACGCCCGGCC 
GTGGCCGCCCGGCTGATCAACACCCTCAAGCGCGGCAGCTACGTGTTCGCCTACTACCCACAGCCGAAGTGG 
CTGGAAACCTCGCGCTTCCTCGCTCCGCAGAGCTGCGCCGTGGCACGTGCGGCACGCACACCGGAAGTCATC 
GCCAGCCTGCTCAAGTGA