ViewGene
Locus Name:
GeneID:
Location:

GeneID:3288
TrivialName: PA14_08260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08260
PAO1 Ortholog Locus:PA0638
Sequence Length:696
Protein Length:231
Start: 705588
Stop: 706283
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04027.1|AE004499_6 (AE004499) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 229/231 (99%), Positives = 229/231 (99%)
Sequence:
ATGACCATCACAGCCGATGACCAGGCCCTCGAGCCTGGGGCGCTGGTGCGCCTGTTCGACCTGGATTGCACC
GGGTTCGGCGGCGAGATGCTGCGCTTCCACGGCCACCTGCAGCAGGGGCCGATCCACTGGCAGGGCAACGCC
TACCAAGCTTGGCCGCTGGAGGCGCGCGGCTTCGAGCAGCGCGGCGACGGCCGGGCCAGTTCGCCGACCCTT
AGCGTGGGCAACATCGACGGCAGCATCAGCGCGCTCTGCCTGTTCTTCGATGGCCTGGTAGGCGCGCGCCTG
ACCGTGCGCGAGACCTATGCGCACTACCTGGATGCGGCCAACTTCGCCGAAGGCAACCCGCAGGCCGACCCC
TCCCAGGAGCGCCTGAACATCTGGTTCCTCGAGCAGAAGACCGCCGAGAACAGCGTCCAGGTGACCTGGGAG
CTGTCCGCTCCGCCGGATTTCCAGGGCCAGCAGATCCCGGCGCGCCAGATCACCTCGCTGTGCCACTGGTGC
ATCACCAACGAGTACCGCGGGCAGGACTGCAACTACACCGGCACGGCGATGTTCGATGCCGACGGCAATCCG
GTGGACGATCCGGCGCTGGACCGCTGCGGCGGCCGGGTCAGCGATTGCAAGCTGCGCTTCGGCGCGGACAAC
CCGCTGTCCCACGGCGGCTTCGCCGGCGCCGGCCTGGTCAGGATGTGA
Translation:
MTITADDQALEPGALVRLFDLDCTGFGGEMLRFHGHLQQGPIHWQGNAYQAWPLEARGFEQRGDGRASSPTL
SVGNIDGSISALCLFFDGLVGARLTVRETYAHYLDAANFAEGNPQADPSQERLNIWFLEQKTAENSVQVTWE
LSAPPDFQGQQIPARQITSLCHWCITNEYRGQDCNYTGTAMFDADGNPVDDPALDRCGGRVSDCKLRFGADN
PLSHGGFAGAGLVRM*
AnnotationID:3296GeneID:3288
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:14
Gene Name:
Confidence Code:3
GeneProduct:putative minor tail protein L
Cell Localization:()
Synonyms:PA0638
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05100
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN55962.1|AE015734_7 (AE015734) prophage LambdaSo, minor tail protein L [Shewanella
           oneidensis MR-1]
          Length = 241

 Score =  249 bits (635), Expect = 1e-65
 Identities = 119/241 (49%), Positives = 155/241 (64%), Gaps = 14/241 (5%)

>gb|AAM85756.1|AE013823_7 (AE013823) putative phage tail protein [Yersinia pestis KIM]
          Length = 250

 Score =  247 bits (630), Expect = 5e-65
 Identities = 119/249 (47%), Positives = 156/249 (62%), Gaps = 19/249 (7%)








 
Structural Features:
pfam05100, Phage_tail_L, Phage minor tail protein L.
CD-Length = 206 residues, 100.0% aligned
Score =  313 bits (802), Expect = 1e-86
Identities = 112/209 (53%), Positives = 142/209 (67%), Gaps = 6/209 (2%)









   
Genomic Context:






   
Comment:


















    ReferenceID:6579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33904




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3288_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3288
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5284
                           PA0638_tr
                           translation of PA0638
                           231
                           99.13
                           99.13
                           0
                           1249.0
     

     
     
148211
                           gb|AAG04027.1|AE004499_6
                           (AE004499) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           231
                           99.13
                           99.13
                           0
                           1249.0
     

     
     
148212
                           emb|CAD15396.1|
                           (AL646065) PROBABLE PHAGE HK022 GP18-RELATED PROTEIN [Ralstonia solanacearum]
                           233
                           56.22
                           70.81
                           2
                           700.0
     

     
     
148213
                           gb|AAN55962.1|AE015734_7
                           (AE015734) prophage LambdaSo, minor tail protein L [Shewanella oneidensis MR-1]
                           244
                           48.77
                           63.52
                           16
                           644.0
     

     
     
148214
                           gb|AAM85756.1|AE013823_7
                           (AE013823) putative phage tail protein [Yersinia pestis KIM]
                           250
                           47.60
                           62.40
                           19
                           641.0
     

     






      

          
GC ORFID: 46290How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0638Glimmer Score: 

          
Start: 6506931Stop: 6507626

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0638 translation of PA0638Homolog Bit Score 485.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7406 (ORF: BLASTX 234.0), t_PA0638 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATCACAGCCGATGACCAGGCCCTCGAGCCTGGGGCGCTGGTGCGCCTGTTCGACCTGGATTGCACC 
GGGTTCGGCGGCGAGATGCTGCGCTTCCACGGCCACCTGCAGCAGGGGCCGATCCACTGGCAGGGCAACGCC 
TACCAAGCTTGGCCGCTGGAGGCGCGCGGCTTCGAGCAGCGCGGCGACGGCCGGGCCAGTTCGCCGACCCTT 
AGCGTGGGCAACATCGACGGCAGCATCAGCGCGCTCTGCCTGTTCTTCGATGGCCTGGTAGGCGCGCGCCTG 
ACCGTGCGCGAGACCTATGCGCACTACCTGGATGCGGCCAACTTCGCCGAAGGCAACCCGCAGGCCGACCCC 
TCCCAGGAGCGCCTGAACATCTGGTTCCTCGAGCAGAAGACCGCCGAGAACAGCGTCCAGGTGACCTGGGAG 
CTGTCCGCTCCGCCGGATTTCCAGGGCCAGCAGATCCCGGCGCGCCAGATCACCTCGCTGTGCCACTGGTGC 
ATCACCAACGAGTACCGCGGGCAGGACTGCAACTACACCGGCACGGCGATGTTCGATGCCGACGGCAATCCG 
GTGGACGATCCGGCGCTGGACCGCTGCGGCGGCCGGGTCAGCGATTGCAAGCTGCGCTTCGGCGCGGACAAC 
CCGCTGTCCCACGGCGGCTTCGCCGGCGCCGGCCTGGTCAGGATGTGA