ViewGene

Locus Name:
GeneID:
Location:

GeneID:3286
TrivialName: PA14_08630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08630
PAO1 Ortholog Locus:PA4279
Sequence Length:747
Protein Length:248
Start: 739340
Stop: 740086
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07667.1|AE004843_9 (AE004843) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
ATGATTCTTGAGCTCGACTGTGGAAACTCGCTGATCAAGTGGCGGGTCATCGAGGGCGCGGCACGGTCGGTC
GCCGGTGGCCTTGCGGAGTCCGATGATGCCCTGGTCGAACAGTTAACATCGCAGCAAGCGCTGCCAGTGCGA
GCCTGTCGCCTGGTGAGCGTTCGCAGCGAGCAGGAAACCTCGCAACTGGTCGCACGGTTGGAGCAGCTGTTC
CCGGTTTCGGCGCTGGTTGCATCATCCGGCAAGCAGTTGGCGGGAGTGCGCAACGGCTATCTCGACTACCAG
CGCCTGGGGCTCGACCGCTGGTTGGCCCTCGTCGCGGCTCATCACCTGGCTAAGAAGGCCTGCCTGGTCATT
GATCTGGGGACCGCGGTCACCTCTGACCTGGTCGCGGCGGATGGAGTGCATCTGGGGGGCTACATATGCCCG
GGCATGACCCTGATGAGAAGCCAGTTGCGCACCCATACCCGACGTATCCGCTACGACGATGCAGAGGCCCGT
CGGGCGCTTGCCAGTCTCCAGCCAGGGCAGGCCACGGCCGAGGCGGTTGAGCGGGGTTGTCTGCTCATGCTC
AGGGGGTTCGTTCGTGAGCAGTACGCCATGGCGTGCGAGCTGCTCGGTCCGGATTGTGAAATATTCCTGACG
GGTGGGGATGCCGAACTGGTTCGCGACGAACTGGCTGGCGCCCGGATCATGCCGGACCTGGTTTTCGTAGGG
CTGGCACTGGCTTGCCCGATTGAGTGA
Translation:
MILELDCGNSLIKWRVIEGAARSVAGGLAESDDALVEQLTSQQALPVRACRLVSVRSEQETSQLVARLEQLF
PVSALVASSGKQLAGVRNGYLDYQRLGLDRWLALVAAHHLAKKACLVIDLGTAVTSDLVAADGVHLGGYICP
GMTLMRSQLRTHTRRIRYDDAEARRALASLQPGQATAEAVERGCLLMLRGFVREQYAMACELLGPDCEIFLT
GGDAELVRDELAGARIMPDLVFVGLALACPIE*
AnnotationID:3294GeneID:3286
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 17:05:28
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4279
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1521
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66068.1|AE016236_2 (AE016775) transcriptional activator, putative [Pseudomonas putida
           KT2440]
          Length = 249

 Score =  310 bits (793), Expect = 6e-84
 Identities = 158/249 (63%), Positives = 189/249 (75%), Gaps = 1/249 (0%)

>gb|AAO54153.1| (AE016858) transcriptional activator, putative, Baf family
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 249

 Score =  308 bits (788), Expect = 2e-83
 Identities = 160/248 (64%), Positives = 186/248 (75%), Gaps = 1/248 (0%)

Structural Features:
COG1521, Putative transcriptional regulator, 
homolog of Bvg accessory factor [Transcription]
CD-Length = 251 residues, 100.0% aligned
Score =  211 bits (538), Expect = 7e-56
Identities = 84/256 (32%), Positives = 116/256 (45%), Gaps = 13/256 (5%)
Genomic Context:
Comment:
ReferenceID:6575
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23717
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36548
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3286_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3286

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5281 PA4279_tr translation of PA4279 248 99.99 99.99 0 1248.0
148100 gb|AAG07667.1|AE004843_9 (AE004843) hypothetical protein PA4279 [Pseudomonas aeruginosa PAO1] 248 99.99 99.99 0 1248.0
148102 gb|AAO54153.1| (AE016858) transcriptional activator, putative, Baf family [Pseudomonas syringae pv. tomato str. DC3000] 249 64.25 74.69 1 790.0
148101 gb|AAN66068.1|AE016236_2 (AE016775) transcriptional activator, putative [Pseudomonas putida KT2440] 249 63.45 75.90 1 795.0
GC ORFID: 46288How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4279Glimmer Score:
Start: 4214600Stop: 4213854
Length: 747
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4279 translation of PA4279Homolog Bit Score 485.0
Other Homologs: psyr_15may02_Scaffold22_revised_gene4231 (ORF: BLASTX 300.0), t_PA4279 (ORF: GLIMMER)
GC ORF Sequence
ATGATTCTTGAGCTCGACTGTGGAAACTCGCTGATCAAGTGGCGGGTCATCGAGGGCGCGGCACGGTCGGTC
GCCGGTGGCCTTGCGGAGTCCGATGATGCCCTGGTCGAACAGTTAACATCGCAGCAAGCGCTGCCAGTGCGA
GCCTGTCGCCTGGTGAGCGTTCGCAGCGAGCAGGAAACCTCGCAACTGGTCGCACGGTTGGAGCAGCTGTTC
CCGGTTTCGGCGCTGGTTGCATCATCCGGCAAGCAGTTGGCGGGAGTGCGCAACGGCTATCTCGACTACCAG
CGCCTGGGGCTCGACCGCTGGTTGGCCCTCGTCGCGGCTCATCACCTGGCTAAGAAGGCCTGCCTGGTCATT
GATCTGGGGACCGCGGTCACCTCTGACCTGGTCGCGGCGGATGGAGTGCATCTGGGGGGCTACATATGCCCG
GGCATGACCCTGATGAGAAGCCAGTTGCGCACCCATACCCGACGTATCCGCTACGACGATGCAGAGGCCCGT
CGGGCGCTTGCCAGTCTCCAGCCAGGGCAGGCCACGGCCGAGGCGGTTGAGCGGGGTTGTCTGCTCATGCTC
AGGGGGTTCGTTCGTGAGCAGTACGCCATGGCGTGCGAGCTGCTCGGTCCGGATTGTGAAATATTCCTGACG
GGTGGGGATGCCGAACTGGTTCGCGACGAACTGGCTGGCGCCCGGATCATGCCGGACCTGGTTTTCGTAGGG
CTGGCACTGGCTTGCCCGATTGAGTGA