ViewGene
Locus Name:
GeneID:
Location:

GeneID:3285
TrivialName: PA14_26310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26310
PAO1 Ortholog Locus:PA2918
Sequence Length:774
Protein Length:257
Start: 2295854
Stop: 2295081
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06306.1|AE004718_3 (AE004718) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 244/257 (94%), Positives = 251/257 (97%)
Sequence:
ATGGTCGACCACTCCATCAAAGGCAAGACCGTCCTCGTCACCGGCGGCGCCAAGAACCTGGGTGGGCTGATC
GCCCGCGATCTCGCCGCCCACGGCGCGAAGGCCATCGCCATCCACTACAACAGCGCCGCGAGCAAGGCCGAC
GCCGACGCCACCGTCGCCGCGCTGCAGGCAGCCGGGGCCAAGGCGGTAGCGCTGCAGGGCGATCTCACCAGC
GCCGCGGCCATGGAAAAGCTGTTCGCCGACGCCATCGCCGCGGTGGGCAAGCCGGACATCGCCATCAACACC
GTCGGCAAGGTGTTGAAGAAGCCTTTCACCGAGATCAGCGAGGCCGAATACGACGAGATGAGCGCGGTCAAT
GCCAAGTCTGCGTTCTTCTTCCTGCGCGAAGCCGGCAAGCACATCAACGACAACGGCAAGATCTGCACCCTG
GTGACCTCCCTGCTTGGCGCCTATACCCCGTACTACGCCGCCTATGCCGGCACCAAGGCGCCGGTGGAGCAC
TTCACCCGCGCCGCCTCCAAGGAATTCGGCGCGCGCGGCATCTCGGTCACCGCGGTCGGCCCGGGTCCGATG
GACACGCCCTTCTTCTATCCCGCCGAGGGCGCCGACGCGGTGGCCTACCACAAGACCGCAGCGGCGCTGTCG
CCCTTCTCCAGGACCGGCCTGACCGACATCGAGGACGTGGTGCCATTCATCCGCCACCTGGTCAGCGAAGGC
TGGTGGATCACCGGCCAGACCATCCTCATCAACGGCGGCTACACCACCAAGTGA
Translation:
MVDHSIKGKTVLVTGGAKNLGGLIARDLAAHGAKAIAIHYNSAASKADADATVAALQAAGAKAVALQGDLTS
AAAMEKLFADAIAAVGKPDIAINTVGKVLKKPFTEISEAEYDEMSAVNAKSAFFFLREAGKHINDNGKICTL
VTSLLGAYTPYYAAYAGTKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPAEGADAVAYHKTAAALS
PFSRTGLTDIEDVVPFIRHLVSEGWWITGQTILINGGYTTK*
AnnotationID:3293GeneID:3285
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA2918
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1028,pfam00106
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32488.1| (BX640443) putative short chain dehydrogenase [Bordetella
           bronchiseptica]
          Length = 257

 Score =  445 bits (1145), Expect = e-124
 Identities = 219/257 (85%), Positives = 244/257 (94%)

>gb|AAL45160.1| (AE009365) dehydrogenase/reductase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 273

 Score =  429 bits (1103), Expect = e-120
 Identities = 206/257 (80%), Positives = 238/257 (92%)








 
Structural Features:
COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues, 100.0% aligned
Score =  132 bits (332), Expect = 4e-32
Identities = 82/255 (32%), Positives = 119/255 (46%), Gaps = 9/255 (3%)

pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  117 bits (294), Expect = 1e-27
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 19/255 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6573




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23715




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36129




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3285_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3285
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5280
                           PA2918_tr
                           translation of PA2918
                           257
                           94.94
                           97.66
                           0
                           1249.0
     

     
     
148093
                           gb|AAG06306.1|AE004718_3
                           (AE004718) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           257
                           94.94
                           97.66
                           0
                           1249.0
     

     
     
148094
                           emb|CAE32488.1|
                           (BX640443) putative short chain dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           257
                           85.21
                           94.94
                           0
                           1145.0
     

     
     
148095
                           emb|CAE37840.1|
                           (BX640430) putative short chain dehydrogenase [Bordetella parapertussis]
                           257
                           85.21
                           94.94
                           0
                           1145.0
     

     
     
148098
                           emb|CAE43801.1|
                           (BX640421) putative short chain dehydrogenase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           257
                           79.37
                           88.71
                           16
                           1060.0
     

     






      

          
GC ORFID: 46287How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2918Glimmer Score: 

          
Start: 2658071Stop: 2658844

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2918 translation of PA2918Homolog Bit Score 485.0

          
Other Homologs:  t_PA2918 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCGACCACTCCATCAAAGGCAAGACCGTCCTCGTCACCGGCGGCGCCAAGAACCTGGGTGGGCTGATC 
GCCCGCGATCTCGCCGCCCACGGCGCGAAGGCCATCGCCATCCACTACAACAGCGCCGCGAGCAAGGCCGAC 
GCCGACGCCACCGTCGCCGCGCTGCAGGCAGCCGGGGCCAAGGCGGTAGCGCTGCAGGGCGATCTCACCAGC 
GCCGCGGCCATGGAAAAGCTGTTCGCCGACGCCATCGCCGCGGTGGGCAAGCCGGACATCGCCATCAACACC 
GTCGGCAAGGTGTTGAAGAAGCCTTTCACCGAGATCAGCGAGGCCGAATACGACGAGATGAGCGCGGTCAAT 
GCCAAGTCTGCGTTCTTCTTCCTGCGCGAAGCCGGCAAGCACATCAACGACAACGGCAAGATCTGCACCCTG 
GTGACCTCCCTGCTTGGCGCCTATACCCCGTACTACGCCGCCTATGCCGGCACCAAGGCGCCGGTGGAGCAC 
TTCACCCGCGCCGCCTCCAAGGAATTCGGCGCGCGCGGCATCTCGGTCACCGCGGTCGGCCCGGGTCCGATG 
GACACGCCCTTCTTCTATCCCGCCGAGGGCGCCGACGCGGTGGCCTACCACAAGACCGCAGCGGCGCTGTCG 
CCCTTCTCCAGGACCGGCCTGACCGACATCGAGGACGTGGTGCCATTCATCCGCCACCTGGTCAGCGAAGGC 
TGGTGGATCACCGGCCAGACCATCCTCATCAACGGCGGCTACACCACCAAGTGA