ViewGene
Locus Name:
GeneID:
Location:

GeneID:3283
TrivialName: PA14_37270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37270
PAO1 Ortholog Locus:PA2112
Sequence Length:744
Protein Length:247
Start: 3319574
Stop: 3320317
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05500.1|AE004638_10 (AE004638) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 243/247 (98%), Positives = 244/247 (98%)
Sequence:
ATGAACAGCCTGTTGTTGAACTGCGATATCGGCGAGAGCTTCGGTGCCTGGCGCATGGGCCTGGACGccGAG
GTGATGCCGCTGATCGATTGCGCCAACATCGCCTGCGGCTTCCACGCCGGCGATCCCGGCACCATGCGCCGC
ACCGTGGCCCTGGCGGTGGAGCATGGCGTGCGCATCGGCGCGCACCCCGGCTACCCCGACCTGGTCGGCTTC
GGCCGGCGCTCGCTGGCCTGCTCGGCGCAGGAAGTGGAAGACCTGCTGCTCTACCAGATCGGCGCCCTCGAC
GGACTCTGCCGCGCCCAGGGCACGCGGGTACGCTACGTCAAGCCGCACGGCGCGCTGTACCAGGACATGATG
CGCGACCCGGCGATCCTCGCCGCCGTGCTGCGCGCACTGGCGGCCTACGACCGCGCCCTGCCGCTGATGCTG
ATGAGCACCCGCGACAACACCGCGGCGCGCGCGCTGGGCGCGGCCCACGGCATCGAGCTGTGGTTCGAGGCG
TTCGCCGACCGCGCGTACGACGGCGCCGGCTACCTGGTCTCGCGCAGCCAGCCCGGCGCGGTACACCACGAC
GCCGAGACGGTGCTCGCCCAGGCCCTCCTGCTGGCCCGTGGCGCGCCGCTGCGAGCCAGCGACGGCAGCGCC
CTGGCGCTGGAGGCGCAGACCCTCTGCGTACACGGTGACAACCCCGCCTCGCTGGCCGCGGTGCGGCGCATC
CGCGACGCCCTGGAGGCGGCATGA
Translation:
MNSLLLNCDIGESFGAWRMGLDAEVMPLIDCANIACGFHAGDPGTMRRTVALAVEHGVRIGAHPGYPDLVGF
GRRSLACSAQEVEDLLLYQIGALDGLCRAQGTRVRYVKPHGALYQDMMRDPAILAAVLRALAAYDRALPLML
MSTRDNTAARALGAAHGIELWFEAFADRAYDGAGYLVSRSQPGAVHHDAETVLAQALLLARGAPLRASDGSA
LALEAQTLCVHGDNPASLAAVRRIRDALEAA*
AnnotationID:3291GeneID:3283
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:59
Gene Name:
Confidence Code:3
GeneProduct:putative lactam utilization protein
Cell Localization:()
Synonyms:PA2112
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1540,pfam03746
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC62220.1| (AP005087) putative lactam utilization protein [Vibrio
           parahaemolyticus]
          Length = 251

 Score =  251 bits (642), Expect = 2e-66
 Identities = 122/241 (50%), Positives = 163/241 (67%), Gaps = 2/241 (0%)

>gb|AAO58800.1| (AE016875) LamB/YcsF family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 256

 Score =  225 bits (574), Expect = 2e-58
 Identities = 117/247 (47%), Positives = 158/247 (63%), Gaps = 3/247 (1%)

>emb|CAB49901.1| (AJ248286) lamB-like lactam utilization related protein [Pyrococcus
           abyssi]
          Length = 255

 Score =  221 bits (562), Expect = 4e-57
 Identities = 110/240 (45%), Positives = 156/240 (65%), Gaps = 3/240 (1%)






 
Structural Features:
COG1540, COG1540, Uncharacterized proteins, homologs of lactam utilization protein B 
CD-Length = 252 residues,  96.8% aligned
Score =  335 bits (860), Expect = 4e-93
Identities = 137/247 (55%), Positives = 166/247 (67%), Gaps = 3/247 (1%)

pfam03746, LamB_YcsF, LamB/YcsF family.
CD-Length = 242 residues,  99.6% aligned
Score =  330 bits (848), Expect = 9e-92
Identities = 145/244 (59%), Positives = 170/244 (69%), Gaps = 3/244 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32605




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3283_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3283
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5276
                           PA2112_tr
                           translation of PA2112
                           247
                           98.38
                           98.78
                           0
                           1249.0
     

     
     
148006
                           gb|AAG05500.1|AE004638_10
                           (AE004638) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           247
                           98.38
                           98.78
                           0
                           1249.0
     

     
     
148007
                           gb|AAN70150.1|AE016654_7
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           258
                           67.82
                           77.13
                           11
                           918.0
     

     
     
148008
                           gb|AAG07899.1|AE004864_11
                           (AE004864) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           251
                           60.15
                           70.91
                           4
                           757.0
     

     
     
5277
                           PA4511_tr
                           translation of PA4511
                           251
                           60.15
                           70.91
                           4
                           757.0
     

     






      

          
GC ORFID: 46285How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2112Glimmer Score: 

          
Start: 1634340Stop: 1633597

          
Length: 744


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2112 translation of PA2112Homolog Bit Score 485.0

          
Other Homologs:  t_PA4511 (ORF: BLASTX 296.0), psyr_15may02_Scaffold2_revised_gene3358 (ORF: BLASTX 223.0), t_PA0492 (ORF: BLASTX 187.0), psyr_15may02_Scaffold16_revised_gene2721 (ORF: BLASTX 176.0), t_PA2112 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCCTGTTGTTGAACTGCGATATCGGCGAGAGCTTCGGTGCCTGGCGCATGGGCCTGGACGccGAG 
GTGATGCCGCTGATCGATTGCGCCAACATCGCCTGCGGCTTCCACGCCGGCGATCCCGGCACCATGCGCCGC 
ACCGTGGCCCTGGCGGTGGAGCATGGCGTGCGCATCGGCGCGCACCCCGGCTACCCCGACCTGGTCGGCTTC 
GGCCGGCGCTCGCTGGCCTGCTCGGCGCAGGAAGTGGAAGACCTGCTGCTCTACCAGATCGGCGCCCTCGAC 
GGACTCTGCCGCGCCCAGGGCACGCGGGTACGCTACGTCAAGCCGCACGGCGCGCTGTACCAGGACATGATG 
CGCGACCCGGCGATCCTCGCCGCCGTGCTGCGCGCACTGGCGGCCTACGACCGCGCCCTGCCGCTGATGCTG 
ATGAGCACCCGCGACAACACCGCGGCGCGCGCGCTGGGCGCGGCCCACGGCATCGAGCTGTGGTTCGAGGCG 
TTCGCCGACCGCGCGTACGACGGCGCCGGCTACCTGGTCTCGCGCAGCCAGCCCGGCGCGGTACACCACGAC 
GCCGAGACGGTGCTCGCCCAGGCCCTCCTGCTGGCCCGTGGCGCGCCGCTGCGAGCCAGCGACGGCAGCGCC 
CTGGCGCTGGAGGCGCAGACCCTCTGCGTACACGGTGACAACCCCGCCTCGCTGGCCGCGGTGCGGCGCATC 
CGCGACGCCCTGGAGGCGGCATGA