ViewGene
Locus Name:
GeneID:
Location:

GeneID:3281
TrivialName: PA14_46950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46950
PAO1 Ortholog Locus:PA1339
Sequence Length:735
Protein Length:244
Start: 4180443
Stop: 4181177
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04728.1|AE004563_5 (AE004563) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 244/244 (100%), Positives = 244/244 (100%)
Sequence:
ATGATTTCCATCAAGAATGTCAGCAAGTGGTATGGCGACTTCCAGGTCCTGACCGACTGCTCCACCGAGGTT
GCGAAAGGCGAAGTGGTGGTGGTCTGCGGGCCGTCCGGCTCGGGCAAGTCGACCCTGATCAAGTGCGTCAAC
GCACTGGAACCCTTCCAGAAGGGCGACATCGTCGTCGACGGCACCTCCATCGCCGATCCGAAGACCAACCTG
CCCAAGCTGCGCTCGCGGGTCGGCATGGTGTTCCAGCATTTCGAGCTGTTCCCCCACCTGAGCATCACCGAG
AACCTGACCATCGCGCAGATCAAGGTGCTCGGCCGCAGCAAGGAAGAAGCCACCAAGAAGGGCCTGGCCCTG
CTCGAGCGCGTCGGTCTCAAGGAGCACGCGCACAAGCACCCCGGCCAGCTCTCCGGCGGCCAGCAGCAGCGC
GTGGCGATCGCCCGCGCGCTGGCGATGGACCCGGTGGTGATGCTGTTCGACGAGCCGACCTCGGCGCTCGAC
CCGGAAATGGTCAACGAAGTGCTCGACGTGATGGTCCAGCTGGCCCACGAAGGCATGACCATGATGTGCGTG
ACCCACGAGATGGGCTTCGCGCGCAAGGTCGCCAACCGGGTGATCTTCATGGACCGCGGGCAGATCGTGGAA
GACTGCGAGAAGGAGGAGTTCTTCGGCGACGTCAGCGCCCGCTCCGAACGCGCCCAGCAGTTCCTCGCCAAG
ATCCTCCCGCACTGA
Translation:
MISIKNVSKWYGDFQVLTDCSTEVAKGEVVVVCGPSGSGKSTLIKCVNALEPFQKGDIVVDGTSIADPKTNL
PKLRSRVGMVFQHFELFPHLSITENLTIAQIKVLGRSKEEATKKGLALLERVGLKEHAHKHPGQLSGGQQQR
VAIARALAMDPVVMLFDEPTSALDPEMVNEVLDVMVQLAHEGMTMMCVTHEMGFARKVANRVIFMDRGQIVE
DCEKEEFFGDVSARSERAQQFLAKILPH*
AnnotationID:3289GeneID:3281
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:gltL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ATP-binding protein of glutamate/aspartate transport system
Functional Category Confidence Code:5
COGs:COG1126,COG4598,cd00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57630.1| (AE016871) amino acid ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 244

 Score =  460 bits (1184), Expect = e-129
 Identities = 230/244 (94%), Positives = 237/244 (97%)

>gb|AAN66693.1|AE016297_7 (AE016778) amino acid ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 256

 Score =  439 bits (1129), Expect = e-123
 Identities = 219/244 (89%), Positives = 229/244 (93%)

>gb|AAG54986.1|AE005244_4 (AE005244) ATP-binding protein of glutamate/aspartate transport
           system [Escherichia coli O157:H7 EDL933]
          Length = 241

 Score =  368 bits (944), Expect = e-101
 Identities = 188/242 (77%), Positives = 207/242 (85%), Gaps = 2/242 (0%)






 
Structural Features:
COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  99.6% aligned
Score =  392 bits (1009), Expect = 2e-110
Identities = 156/242 (64%), Positives = 188/242 (77%), Gaps = 3/242 (1%)

COG4598, HisP, ABC-type histidine transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 256 residues,  97.3% aligned
Score =  261 bits (668), Expect = 6e-71
Identities = 124/252 (49%), Positives = 169/252 (67%), Gaps = 15/252 (5%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  98.2% aligned
Score =  206 bits (527), Expect = 1e-54
Identities = 93/217 (42%), Positives = 135/217 (62%), Gaps = 6/217 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6565




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23707




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37472




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3281_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3281
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5267
                           PA1339_tr
                           translation of PA1339
                           244
                           99.99
                           99.99
                           0
                           1248.0
     

     
     
147342
                           gb|AAG04728.1|AE004563_5
                           (AE004563) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           244
                           99.99
                           99.99
                           0
                           1248.0
     

     
     
147343
                           gb|AAO57630.1|
                           (AE016871) amino acid ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           244
                           94.26
                           97.13
                           0
                           1184.0
     

     
     
147344
                           gb|AAN66693.1|AE016297_7
                           (AE016778) amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           256
                           85.54
                           89.45
                           12
                           1129.0
     

     
     
147346
                           emb|CAD14012.1|
                           (AL646059) PUTATIVE GLUTAMATE/ASPARTATE TRANSPORT ATP-BINDING ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           244
                           84.01
                           90.98
                           0
                           1049.0
     

     






      

          
GC ORFID: 46283How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1339Glimmer Score: 

          
Start: 773466Stop: 772732

          
Length: 735


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1339 translation of PA1339Homolog Bit Score 485.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6133 (ORF: BLASTX 457.0), psyr_15may02_Scaffold3_revised_gene4390 (ORF: BLASTX 285.0), t_PA5074 (ORF: BLASTX 270.0), t_PA4192 (ORF: BLASTX 270.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 228.0), psyr_15may02_Scaffold5_revised_gene6103 (ORF: BLASTX 224.0), t_PA1256 (ORF: BLASTX 220.0), t_PA5152 (ORF: BLASTX 218.0), t_PA2926 (ORF: BLASTX 217.0), psyr_15may02_Scaffold2_revised_gene3873 (ORF: BLASTX 214.0), t_PA0892 (ORF: BLASTX 212.0), psyr_15may02_Scaffold6_revised_gene6950 (ORF: BLASTX 212.0), psyr_15may02_Scaffold7_revised_gene7435 (ORF: BLASTX 212.0), psyr_15may02_Scaffold2_revised_gene3825 (ORF: BLASTX 210.0), psyr_15may02_Scaffold7_revised_gene7195 (ORF: BLASTX 207.0), psyr_15may02_Scaffold7_revised_gene7315 (ORF: BLASTX 137.0), t_PA1339 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTTCCATCAAGAATGTCAGCAAGTGGTATGGCGACTTCCAGGTCCTGACCGACTGCTCCACCGAGGTT 
GCGAAAGGCGAAGTGGTGGTGGTCTGCGGGCCGTCCGGCTCGGGCAAGTCGACCCTGATCAAGTGCGTCAAC 
GCACTGGAACCCTTCCAGAAGGGCGACATCGTCGTCGACGGCACCTCCATCGCCGATCCGAAGACCAACCTG 
CCCAAGCTGCGCTCGCGGGTCGGCATGGTGTTCCAGCATTTCGAGCTGTTCCCCCACCTGAGCATCACCGAG 
AACCTGACCATCGCGCAGATCAAGGTGCTCGGCCGCAGCAAGGAAGAAGCCACCAAGAAGGGCCTGGCCCTG 
CTCGAGCGCGTCGGTCTCAAGGAGCACGCGCACAAGCACCCCGGCCAGCTCTCCGGCGGCCAGCAGCAGCGC 
GTGGCGATCGCCCGCGCGCTGGCGATGGACCCGGTGGTGATGCTGTTCGACGAGCCGACCTCGGCGCTCGAC 
CCGGAAATGGTCAACGAAGTGCTCGACGTGATGGTCCAGCTGGCCCACGAAGGCATGACCATGATGTGCGTG 
ACCCACGAGATGGGCTTCGCGCGCAAGGTCGCCAACCGGGTGATCTTCATGGACCGCGGGCAGATCGTGGAA 
GACTGCGAGAAGGAGGAGTTCTTCGGCGACGTCAGCGCCCGCTCCGAACGCGCCCAGCAGTTCCTCGCCAAG 
ATCCTCCCGCACTGA