ViewGene
Locus Name:
GeneID:
Location:

GeneID:3280
TrivialName: PA14_51810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51810
PAO1 Ortholog Locus:PA0964
Sequence Length:747
Protein Length:248
Start: 4601234
Stop: 4600488
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04353.1|AE004530_6 (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
ATGGCTGGTCATTCTAAATGGGCCAACATCAAGCACCGCAAAGAGCGGCAAGATGCCAAGAAAGGCAAGATC
TTCACCAAGCTGATCCGTGAGCTGACCGTCGCTGCAAGGCAGGGCGGCGGCGTCCCGGCGGACAACCCGCGT
CTGCGCCTGGCCGTGGACAAGGCGCTGACCGCCAACATGACCCGCGATACCATCGACCGTGCCATTGCGCGC
GGCGTCGGCTCCAACGATGCCGACAACATGGTCGAGCTTTCCTATGAAGGCTATGCGCCGAGCGGCGTAGCG
ATCATCGTCGAGGCGATGACCGACAACCGCAACCGTACCGCTGCGGAAGTGCGTCATGCCTTCAGCAAGTGT
GGCGGCAACCTGGGCACCGATGGTTCGGTCGCCTACATGTTCGAGCGCAAGGGACAGATCAGCTTCGCTCCC
GGCGTGGACGAGGAAGCGCTGATGGACGCGGCCCTGGAGGCCGGCGCCGATGACGTGGTAGTCAACGACGAT
GGCTCCATCGACGTGTTCACCACCTTCGCCGACTTCATTTCGGTGAACGAGGCGCTGGCCGCCGCCGGATTC
AAGGGCGACGAAGCCGAAGTCACCATGATCCCTTCGACCACCGCGACCCTGGACCTGGAAACCGCGCAGAAG
GTGCTCAAGCTGATCGACATGCTCGAGGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCGATATCCCG
GACGACGTGATGGCGCAGCTCGGCTGA
Translation:
MAGHSKWANIKHRKERQDAKKGKIFTKLIRELTVAARQGGGVPADNPRLRLAVDKALTANMTRDTIDRAIAR
GVGSNDADNMVELSYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFSKCGGNLGTDGSVAYMFERKGQISFAP
GVDEEALMDAALEAGADDVVVNDDGSIDVFTTFADFISVNEALAAAGFKGDEAEVTMIPSTTATLDLETAQK
VLKLIDMLEDLDDVQNVYSNADIPDDVMAQLG*
AnnotationID:3288GeneID:3280
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0964, yebC 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0217, pfam01709
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0217, Uncharacterized conserved protein [Function unknown]. Score: 347, 9e-97
pfam01709, DUF28, Domain of unknown function DUF28. Score: 335, 4e-93






   
Genomic Context:






   
Comment:


















    ReferenceID:6563




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3280
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5266
                           PA0964_tr
                           translation of PA0964
                           248
                           99.99
                           99.99
                           0
                           1249.0
     

     
     
147228
                           gb|AAG04353.1|AE004530_6
                           (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           248
                           99.99
                           99.99
                           0
                           1249.0
     

     
     
147229
                           dbj|BAA11816.1|
                           (D83138) unknown [Pseudomonas aeruginosa]
                           248
                           99.59
                           99.99
                           0
                           1245.0
     

     
     
147230
                           gb|AAO57439.1|
                           (AE016870) conserved hypothetical protein TIGR01033 [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           78.62
                           89.51
                           0
                           1021.0
     

     
     
147231
                           gb|AAN66838.1|AE016312_9
                           (AE016778) conserved hypothetical protein TIGR01033 [Pseudomonas putida KT2440]
                           248
                           76.20
                           87.09
                           0
                           983.0
     

     






      

          
GC ORFID: 46282How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0964Glimmer Score: 

          
Start: 352673Stop: 353419

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0964 translation of PA0964Homolog Bit Score 485.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4684 (ORF: BLASTX 399.0), t_PA0964 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGGTCATTCTAAATGGGCCAACATCAAGCACCGCAAAGAGCGGCAAGATGCCAAGAAAGGCAAGATC 
TTCACCAAGCTGATCCGTGAGCTGACCGTCGCTGCAAGGCAGGGCGGCGGCGTCCCGGCGGACAACCCGCGT 
CTGCGCCTGGCCGTGGACAAGGCGCTGACCGCCAACATGACCCGCGATACCATCGACCGTGCCATTGCGCGC 
GGCGTCGGCTCCAACGATGCCGACAACATGGTCGAGCTTTCCTATGAAGGCTATGCGCCGAGCGGCGTAGCG 
ATCATCGTCGAGGCGATGACCGACAACCGCAACCGTACCGCTGCGGAAGTGCGTCATGCCTTCAGCAAGTGT 
GGCGGCAACCTGGGCACCGATGGTTCGGTCGCCTACATGTTCGAGCGCAAGGGACAGATCAGCTTCGCTCCC 
GGCGTGGACGAGGAAGCGCTGATGGACGCGGCCCTGGAGGCCGGCGCCGATGACGTGGTAGTCAACGACGAT 
GGCTCCATCGACGTGTTCACCACCTTCGCCGACTTCATTTCGGTGAACGAGGCGCTGGCCGCCGCCGGATTC 
AAGGGCGACGAAGCCGAAGTCACCATGATCCCTTCGACCACCGCGACCCTGGACCTGGAAACCGCGCAGAAG 
GTGCTCAAGCTGATCGACATGCTCGAGGACCTGGACGACGTGCAGAACGTCTATTCCAATGCCGATATCCCG 
GACGACGTGATGGCGCAGCTCGGCTGA