ViewGene

Locus Name:
GeneID:
Location:

GeneID:3279
TrivialName: PA14_02640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02640
PAO1 Ortholog Locus:PA0216
Sequence Length:765
Protein Length:254
Start: 233992
Stop: 234756
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03605.1|AE004459_9 (AE004459) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 254/254 (100%), Positives = 254/254 (100%)
Sequence:
ATGTTCGAGTCCCTGAACAAAGTCATCAATGGCTACGGCCTGATCAGCGGCTTCGCCATCATCGGCGTGACC
ATGGCGGTGTCCTACTGGTTGTCGGCGCGCCTCACCCGCGGGCGCCTGCACGGCTCGGCGATCGCGATCTTC
CTCGGCCTGGTGCTGTCCTACGTCGGCGGCGTCGCCACCGGCGGGCAGAAAGGATTGGTGGACGTGCCCCTG
ATGTCCGGTATCGGCCTGCTGGGCGGCGCCATGCTGCGCGACTTCGCCATCGTCGCCACGGCCTTCGGGGTG
AATGTCGAGGAATTGCGTCGGGCAGGGGTTTCCGGGGTGGTGTCGCTGTTCCTCGGGGTCGGTTCGTCGTTC
GTCGCCGGGGTCGCGGTGGCCATGGCGTTCGGCTACACCGATGCGGTCAGCCTGACCACCATCGGCGCCGGC
GCGGTCACCTACATCGTCGGACCGGTGACCGGCGCCGCCCTGGGGGCCAGCTCCGAGGTGATGGCGCTGAGC
ATCGCCGCCGGGCTGGTGAAGGCGATCCTGGTGATGGTCCTGACGCCTTTCGTCGCGCCCTACATCGGCCTG
AACAATCCACGTACGGCGGTGATCTTCGGTGGTCTCATGGGCACCTCCAGTGGCGTCGCCGGCGGCCTCGCC
GCCACCGACCCGAAGCTGGTGCCCTACGGTTGCCTGACCGCGGCGTTCTATACCGCCATCGGTTGCCTGCTG
GGGCCGTCGCTGCTGTATTTCAGCGTGCGCGGCCTGGTTGGGTGA
Translation:
MFESLNKVINGYGLISGFAIIGVTMAVSYWLSARLTRGRLHGSAIAIFLGLVLSYVGGVATGGQKGLVDVPL
MSGIGLLGGAMLRDFAIVATAFGVNVEELRRAGVSGVVSLFLGVGSSFVAGVAVAMAFGYTDAVSLTTIGAG
AVTYIVGPVTGAALGASSEVMALSIAAGLVKAILVMVLTPFVAPYIGLNNPRTAVIFGGLMGTSSGVAGGLA
ATDPKLVPYGCLTAAFYTAIGCLLGPSLLYFSVRGLVG*
AnnotationID:3287GeneID:3279
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:31
Gene Name:
Confidence Code:3
GeneProduct:putative malonate transporter, MadM subunit
Cell Localization:()
Synonyms:mcdM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03818
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58506.1| (AE016874) malonate transporter, MadM subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 254

 Score =  328 bits (842), Expect = 1e-89
 Identities = 166/254 (65%), Positives = 203/254 (79%)

>dbj|BAA36212.1| (AB017138) malonate transporter [Pseudomonas putida]
          Length = 254

 Score =  327 bits (839), Expect = 3e-89
 Identities = 168/254 (66%), Positives = 199/254 (78%)

>dbj|BAC46543.1| (AP005939) malonate transporter [Bradyrhizobium japonicum USDA 110]
          Length = 254

 Score =  322 bits (825), Expect = 1e-87
 Identities = 161/250 (64%), Positives = 203/250 (81%)

Structural Features:
pfam03818, MadM, Malonate/sodium symporter MadM subunit.
CD-Length = 60 residues, 100.0% aligned
Score = 77.3 bits (190), Expect = 2e-15
Identities = 40/60 (66%), Positives = 48/60 (80%)
Genomic Context:
Comment:
"madM" is also a possible gene name
ReferenceID:6561
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23703
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33572
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3279_cdd.html
URL:
ReferenceID:35460
Author/Investigator(s): Chohnan S, Kurusu Y, Nishihara H, Takamura Y.
Title: Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida.
PubMed: 10339824
MedLine:
Source:
FEMS Microbiol Lett. 1999 May 15;174(2):311-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10339824
Homologs By Global Alignment
Gene ID:3279

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5265 PA0216_tr translation of PA0216 254 99.99 99.99 0 1252.0
147222 gb|AAG03605.1|AE004459_9 (AE004459) probable transporter [Pseudomonas aeruginosa PAO1] 254 99.99 99.99 0 1252.0
147225 dbj|BAA36212.1| (AB017138) malonate transporter [Pseudomonas putida] 254 66.14 78.34 0 839.0
147223 gb|AAO58506.1| (AE016874) malonate transporter, MadM subunit [Pseudomonas syringae pv. tomato str. DC3000] 254 65.35 79.92 0 842.0
147224 gb|AAC45408.1| (U87980) MadM [Malonomonas rubra] 255 63.13 81.96 1 843.0
GC ORFID: 46281How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0216Glimmer Score:
Start: 6035333Stop: 6036097
Length: 765
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0216 translation of PA0216Homolog Bit Score 486.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3325 (ORF: BLASTX 328.0), t_PA0216 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCGAGTCCCTGAACAAAGTCATCAATGGCTACGGCCTGATCAGCGGCTTCGCCATCATCGGCGTGACC
ATGGCGGTGTCCTACTGGTTGTCGGCGCGCCTCACCCGCGGGCGCCTGCACGGCTCGGCGATCGCGATCTTC
CTCGGCCTGGTGCTGTCCTACGTCGGCGGCGTCGCCACCGGCGGGCAGAAAGGATTGGTGGACGTGCCCCTG
ATGTCCGGTATCGGCCTGCTGGGCGGCGCCATGCTGCGCGACTTCGCCATCGTCGCCACGGCCTTCGGGGTG
AATGTCGAGGAATTGCGTCGGGCAGGGGTTTCCGGGGTGGTGTCGCTGTTCCTCGGGGTCGGTTCGTCGTTC
GTCGCCGGGGTCGCGGTGGCCATGGCGTTCGGCTACACCGATGCGGTCAGCCTGACCACCATCGGCGCCGGC
GCGGTCACCTACATCGTCGGACCGGTGACCGGCGCCGCCCTGGGGGCCAGCTCCGAGGTGATGGCGCTGAGC
ATCGCCGCCGGGCTGGTGAAGGCGATCCTGGTGATGGTCCTGACGCCTTTCGTCGCGCCCTACATCGGCCTG
AACAATCCACGTACGGCGGTGATCTTCGGTGGTCTCATGGGCACCTCCAGTGGCGTCGCCGGCGGCCTCGCC
GCCACCGACCCGAAGCTGGTGCCCTACGGTTGCCTGACCGCGGCGTTCTATACCGCCATCGGTTGCCTGCTG
GGGCCGTCGCTGCTGTATTTCAGCGTGCGCGGCCTGGTTGGGTGA