ViewGene

Locus Name:
GeneID:
Location:

GeneID:3277
TrivialName: PA14_67890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67890
PAO1 Ortholog Locus:PA5141
Sequence Length:738
Protein Length:245
Start: 6062299
Stop: 6061562
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08526.1|AE004927_4 (AE004927) phosphoribosylformimino-5-aminoimidazole carboxamide [Pseudomonas aeruginosa PAO1]
Identities = 245/245 (100%), Positives = 245/245 (100%)
Sequence:
ATGCTGATCATTCCCGCGATCGACTTGAAAGACGGCGCCTGCGTGCGTCTGCGCCAGGGCCTGATGGAAGAC
GCCACGGTCTTCTCCGACGATCCGGTGGCGATGGCCGCCAAATGGGTCGATGGCGGTTGCCGCCGCTTGCAC
CTGGTGGACCTGAACGGCGCTTTCGAAGGCAAGCCGGTCAACGGCGAGGTGGTCACCGCCATCGCCCGTCGC
TACCCGGACCTGCCGATCCAGATCGGTGGCGGCATCCGCTCGCTGGAAACCATCGAGCATTACGTTCGCGCC
GGCGTCAGCTACGTCATCATCGGCACCAAGGCGGTCAAGCAGCCTGAGTTCGTCGGCGAGGCCTGCCGCGCC
TTCCCGGGCAAGGTCATCGTCGGCCTGGATGCCAAGGACGGTTTCGTCGCCACCGACGGCTGGGCCGAGGTC
AGCGAAGTCCAGGTGATCGACCTGGCCCGTCGCTTCGAGGCCGACGGGGTGTCCGCCATCGTCTACACGGAT
ATCTCCAAGGACGGCATGATGCAGGGCTGCAACGTCGAGGCTACCGCCGCGCTGGCCAATGCCACGCGGATT
CCGGTGATCGCCTCCGGCGGCATCCACAATCTCGGCGACATCCAGAAGCTGCTGGACGCCCGCACCCCGGGG
ATCATCGGCGCCATCACCGGCCGGGCGATCTACGAAGGCACCCTGGACGTGGCCGAAGCCCAGGCGCTGTGC
GACAACTTCAAGGCCTGA
Translation:
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARR
YPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKDGFVATDGWAEV
SEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPG
IIGAITGRAIYEGTLDVAEAQALCDNFKA*
AnnotationID:3285GeneID:3277
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 13:01:08
Gene Name:hisA
Confidence Code:2
GeneProduct:phosphoribosylformimino-5-aminoimidazole carboxamide
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Functional Category Confidence Code:5
COGs:COG0106,pfam00977
Secondary Functional Category(ies):
EC Number:5.3.1.16
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65923.1|AE016220_5 (AE016775) phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase [Pseudomonas putida KT2440]
          Length = 245

 Score =  445 bits (1144), Expect = e-124
 Identities = 220/244 (90%), Positives = 234/244 (95%)

>gb|AAO58761.1| (AE016875) phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 245

 Score =  442 bits (1136), Expect = e-123
 Identities = 219/241 (90%), Positives = 232/241 (96%)

>dbj|BAC65275.1| (AB091436) phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase [Burkholderia multivorans]
          Length = 251

 Score =  302 bits (774), Expect = 1e-81
 Identities = 154/242 (63%), Positives = 184/242 (76%), Gaps = 1/242 (0%)

Structural Features:
COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide 
ribonucleotide (ProFAR) isomerase 
[Amino acid transport and metabolism]
CD-Length = 241 residues,  99.2% aligned
Score =  293 bits (753), Expect = 8e-81
Identities = 124/242 (51%), Positives = 158/242 (65%), Gaps = 3/242 (1%)

pfam00977, His_biosynth, Histidine biosynthesis protein.
CD-Length = 240 residues, 100.0% aligned
Score =  227 bits (579), Expect = 1e-60
Identities = 97/244 (39%), Positives = 141/244 (57%), Gaps = 8/244 (3%)
Genomic Context:
Comment:
ReferenceID:6557
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23699
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34947
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3277_cdd.html
URL:
ReferenceID:35786
Author/Investigator(s): Erbeznik M, Strobel HJ, Dawson KA.
Title: Organization and sequence of histidine biosynthesis genes hisH, -A, -F, and -IE in Thermoanaerobacter ethanolicus.
PubMed: 10594232
MedLine:
Source:
Curr Microbiol. 2000 Feb;40(2):140-2.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10594232
ReferenceID:35788
Author/Investigator(s): Limauro D, Avitabile A, Cappellano C, Puglia AM, Bruni CB.
Title: Cloning and characterization of the histidine biosynthetic gene cluster of Streptomyces coelicolor A3(2).
PubMed: 2199329
MedLine:
Source:
Gene. 1990 May 31;90(1):31-41.

Erratum in:
    * Gene. 1991 May 15;101(1):161-2.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2199329
Homologs By Global Alignment
Gene ID:3277

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5258 PA5141_tr translation of PA5141 245 99.99 99.99 0 1251.0
146997 gb|AAG08526.1|AE004927_4 (AE004927) phosphoribosylformimino-5-aminoimidazole carboxamide [Pseudomonas aeruginosa PAO1] 245 99.99 99.99 0 1251.0
146998 gb|AAN65923.1|AE016220_5 (AE016775) phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Pseudomonas putida KT2440] 245 89.79 95.51 0 1144.0
146999 gb|AAO58761.1| (AE016875) phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Pseudomonas syringae pv. tomato str. DC3000] 245 89.38 95.10 0 1133.0
147001 dbj|BAC65275.1| (AB091436) phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Burkholderia multivorans] 251 61.35 73.30 6 776.0
GC ORFID: 46279How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5141Glimmer Score:
Start: 5325984Stop: 5325247
Length: 738
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5141 translation of PA5141Homolog Bit Score 486.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6487 (ORF: BLASTX 444.0), t_PA5141 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGATCATTCCCGCGATCGACTTGAAAGACGGCGCCTGCGTGCGTCTGCGCCAGGGCCTGATGGAAGAC
GCCACGGTCTTCTCCGACGATCCGGTGGCGATGGCCGCCAAATGGGTCGATGGCGGTTGCCGCCGCTTGCAC
CTGGTGGACCTGAACGGCGCTTTCGAAGGCAAGCCGGTCAACGGCGAGGTGGTCACCGCCATCGCCCGTCGC
TACCCGGACCTGCCGATCCAGATCGGTGGCGGCATCCGCTCGCTGGAAACCATCGAGCATTACGTTCGCGCC
GGCGTCAGCTACGTCATCATCGGCACCAAGGCGGTCAAGCAGCCTGAGTTCGTCGGCGAGGCCTGCCGCGCC
TTCCCGGGCAAGGTCATCGTCGGCCTGGATGCCAAGGACGGTTTCGTCGCCACCGACGGCTGGGCCGAGGTC
AGCGAAGTCCAGGTGATCGACCTGGCCCGTCGCTTCGAGGCCGACGGGGTGTCCGCCATCGTCTACACGGAT
ATCTCCAAGGACGGCATGATGCAGGGCTGCAACGTCGAGGCTACCGCCGCGCTGGCCAATGCCACGCGGATT
CCGGTGATCGCCTCCGGCGGCATCCACAATCTCGGCGACATCCAGAAGCTGCTGGACGCCCGCACCCCGGGG
ATCATCGGCGCCATCACCGGCCGGGCGATCTACGAAGGCACCCTGGACGTGGCCGAAGCCCAGGCGCTGTGC
GACAACTTCAAGGCCTGA