ViewGene
Locus Name:
GeneID:
Location:

GeneID:3274
TrivialName: PA14_12650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12650
PAO1 Ortholog Locus:PA3959
Sequence Length:735
Protein Length:244
Start: 1086387
Stop: 1085653
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07346.1|AE004814_1 (AE004814) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 244/244 (100%), Positives = 244/244 (100%)
Sequence:
ATGCCCCTACGCACCACAACGCCCCTGCTCGCGCTGCTGGCGTTCGCCCTGCTGGCCGCCCCGCAGCTCCAT
GCGCAGGACGCAAGGCCGTCGTTGAACGTCGGCTACTACGAATTCCCCCCCTACATCTATACCGCCCGGGAT
GGCCACGCCGCCGGTTCCGGCGCCCGCCTGGTCCGCCTGCTGCTGGAGCGGGCCGGCTATCGTCCGGCGTTC
CGTGCCCTGCCCAGCGCGCGCCTGTACCTGGGGCTGCAGGACGGCAGCGTGGCGCTGTGGGCCGGCGCGGCC
AAGCCGGAGCTGGCCGCCGACACCCTCCAGGCGCGGCGCGTGCTCGGCCACGTCAGCCTGAACCTGTACTAC
CCGGCGCACCAGCCGGCACCGCGGGTTCCCCAGGACCTGGCCGGACGCCGGCTGATCCTGATCAGCGGCTAC
AGCTACTGGAAACCGGTCACCAACTTCATCCAGGACCCCAACCTGCACCTGCGCCTGTACCGCACCGGCACC
CACCACGCTGCCTTGCGCATGCTCGAACTCGGGCGCGGCGACTACCTGCTCGACTACCAGGCGCCGGTGGAA
GCGGCCAGCCGCCAGGCGTTGGCGAGCCAGGAACTGTACCGCCTGCCGCTGCGGATGATCGTCTCGCGCCAC
ATTCCCGGCGCCGAAGCGCTGCGCGACCGCCTGGACCAGGCCTACGACCAGTTGCGGAGCGACGGCGCCGAC
CTGTCCCTGCTGTGA
Translation:
MPLRTTTPLLALLAFALLAAPQLHAQDARPSLNVGYYEFPPYIYTARDGHAAGSGARLVRLLLERAGYRPAF
RALPSARLYLGLQDGSVALWAGAAKPELAADTLQARRVLGHVSLNLYYPAHQPAPRVPQDLAGRRLILISGY
SYWKPVTNFIQDPNLHLRLYRTGTHHAALRMLELGRGDYLLDYQAPVEAASRQALASQELYRLPLRMIVSRH
IPGAEALRDRLDQAYDQLRSDGADLSLL*
AnnotationID:3282GeneID:3274
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 17:05:12
Gene Name:
Confidence Code:3
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3959
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|10701 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems,
periplasmic component/domain
Length = 275
Score = 37.3 bits (85), Expect = 0.003
Identities = 53/262 (20%), Positives = 91/262 (34%), Gaps = 33/262 (12%)






   
Genomic Context:






   
Comment:
Weak similarity to ABC transporter.


















    ReferenceID:6551




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23693




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3274
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5255
                           PA3959_tr
                           translation of PA3959
                           244
                           99.99
                           99.99
                           0
                           1252.0
     

     
     
146840
                           gb|AAG07346.1|AE004814_1
                           (AE004814) hypothetical protein PA3959 [Pseudomonas aeruginosa PAO1]
                           244
                           99.99
                           99.99
                           0
                           1252.0
     

     






      

          
GC ORFID: 46276How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3959Glimmer Score: 

          
Start: 3867551Stop: 3868285

          
Length: 735


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3959 translation of PA3959Homolog Bit Score 486.0

          
Other Homologs:  t_PA3959 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCTACGCACCACAACGCCCCTGCTCGCGCTGCTGGCGTTCGCCCTGCTGGCCGCCCCGCAGCTCCAT 
GCGCAGGACGCAAGGCCGTCGTTGAACGTCGGCTACTACGAATTCCCCCCCTACATCTATACCGCCCGGGAT 
GGCCACGCCGCCGGTTCCGGCGCCCGCCTGGTCCGCCTGCTGCTGGAGCGGGCCGGCTATCGTCCGGCGTTC 
CGTGCCCTGCCCAGCGCGCGCCTGTACCTGGGGCTGCAGGACGGCAGCGTGGCGCTGTGGGCCGGCGCGGCC 
AAGCCGGAGCTGGCCGCCGACACCCTCCAGGCGCGGCGCGTGCTCGGCCACGTCAGCCTGAACCTGTACTAC 
CCGGCGCACCAGCCGGCACCGCGGGTTCCCCAGGACCTGGCCGGACGCCGGCTGATCCTGATCAGCGGCTAC 
AGCTACTGGAAACCGGTCACCAACTTCATCCAGGACCCCAACCTGCACCTGCGCCTGTACCGCACCGGCACC 
CACCACGCTGCCTTGCGCATGCTCGAACTCGGGCGCGGCGACTACCTGCTCGACTACCAGGCGCCGGTGGAA 
GCGGCCAGCCGCCAGGCGTTGGCGAGCCAGGAACTGTACCGCCTGCCGCTGCGGATGATCGTCTCGCGCCAC 
ATTCCCGGCGCCGAAGCGCTGCGCGACCGCCTGGACCAGGCCTACGACCAGTTGCGGAGCGACGGCGCCGAC 
CTGTCCCTGCTGTGA