ViewGene
Locus Name:
GeneID:
Location:

GeneID:3273
TrivialName: PA14_17620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17620
PAO1 Ortholog Locus:PA3609
Sequence Length:771
Protein Length:256
Start: 1514948
Stop: 1514178
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06997.1|AE004781_5 (AE004781) polyamine transport protein PotC [Pseudomonas aeruginosa PAO1]
Identities = 255/256 (99%), Positives = 255/256 (99%)
Sequence:
ATGCGTAGGCCCTACCTGCTCTGGAGCGCCACCGCGCTGGTGTACCTGTTCCTCTACGTACCGCTGGTGATC
GTGGTGCTGTACTCCTTCAACGACTCGCGGCTGAACGCCGAGTGGGTGGGCTTCACCCTGGACTGGTACCGC
AAGCTGTTCGGCAACCGCGACATGCTCCAGGCCGCCGCCAACTCGCTGGTCATCGCGCTGGTTTCGGCCAGC
GTGGCGACCCTGCTCGGCACCCTCGCCGGGGTCGCCCTGCATCGCTTCAAGCTGCGCGTGCTGCCCCTGCTG
GTGCTGACCCCAATCGCCATTCCGGAACTCCTGATGGGAGTCTCGCTGGTGATCTTCTTCATCGGCCTGAAC
ATGAGCCTGGGCATGCTCTCGGTGACCCTCGCGCACATCACCTTCTCGGTCGGCTTCGTCGCCCTGGTGGTG
CAGGCGCGCATGTCGGGCATGGACGAAAGCCTCACCGAGGCGGCCCGCGACCTCGGTGCCACGCCCTGGCAG
AGCTTCCGCCTGGTGACCCTGCCGCTGATCATGCCGGGCATCGTCGCCGGCGCGCTGATGGCCTTCACCCTG
TCCATCGACGACTTCGTGATCACCTTCTTCACCGCCGGCGGCGGCTTCGCCACCCTGCCGACGCAGATCTAC
ACCATGATCAAGATCGCCGTGACGCCCGAAGTGAACGCCGTCTCCACCCTGCTGATGCTGCTCACCCTGGTG
CTGATCGTGATCGCCTCGAAACTCTCCCCCAGCGCCATCAAGGGCCATTGA
Translation:
MRRPYLLWSATALVYLFLYVPLVIVVLYSFNDSRLNAEWVGFTLDWYRKLFGNRDMLQAAANSLVIALVSAS
VATLLGTLAGVALHRFKLRVLPLLVLTPIAIPELLMGVSLVIFFIGLNMSLGMLSVTLAHITFSVGFVALVV
QARMSGMDESLTEAARDLGATPWQSFRLVTLPLIMPGIVAGALMAFTLSIDDFVITFFTAGGGFATLPTQIY
TMIKIAVTPEVNAVSTLLMLLTLVLIVIASKLSPSAIKGH*
AnnotationID:3281GeneID:3273
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:23
Gene Name:potC
Confidence Code:2
GeneProduct:polyamine transport protein PotC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1177
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85783.1| (BX321862) potC; putative spermidine/putrescine transport system
           permease protein [Nitrosomonas europaea ATCC 19718]
          Length = 258

 Score =  355 bits (910), Expect = 2e-97
 Identities = 170/255 (66%), Positives = 218/255 (85%), Gaps = 1/255 (0%)

>dbj|BAB50904.1| (AP003003) spermidine/putrescine ABC transporter, permease protein
           [Mesorhizobium loti]
          Length = 264

 Score =  234 bits (596), Expect = 5e-61
 Identities = 113/251 (45%), Positives = 174/251 (69%), Gaps = 4/251 (1%)

>gb|AAN79868.1|AE016759_142 (AE016759) Spermidine/putrescine transport system permease protein
           potC [Escherichia coli CFT073]
          Length = 264

 Score =  214 bits (546), Expect = 3e-55
 Identities = 100/246 (40%), Positives = 166/246 (67%), Gaps = 3/246 (1%)






 
Structural Features:
COG1177, PotC, ABC-type spermidine/putrescine transport system, 
permease component II 
[Amino acid transport and metabolism]
CD-Length = 267 residues,  96.6% aligned
Score =  216 bits (551), Expect = 6e-57
Identities = 139/258 (53%), Positives = 191/258 (74%), Gaps = 4/258 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31932




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3273_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3273
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5252
                           PA3609_tr
                           translation of PA3609
                           256
                           99.60
                           99.60
                           0
                           1252.0
     

     
     
146778
                           gb|AAG06997.1|AE004781_5
                           (AE004781) polyamine transport protein PotC [Pseudomonas aeruginosa PAO1]
                           256
                           99.60
                           99.60
                           0
                           1252.0
     

     
     
146779
                           gb|AAQ61761.1|
                           (AE016924) polyamine transport protein PotC [Chromobacterium violaceum ATCC 12472]
                           262
                           69.46
                           84.73
                           12
                           941.0
     

     
     
146780
                           emb|CAD85783.1|
                           (BX321862) potC; putative spermidine/putrescine transport system permease protein [Nitrosomonas europaea ATCC 19718]
                           258
                           66.66
                           85.65
                           2
                           913.0
     

     
     
146787
                           dbj|BAC52368.1|
                           (AP005961) ABC transporter permease protein [Bradyrhizobium japonicum USDA 110]
                           272
                           48.16
                           66.91
                           18
                           586.0
     

     






      

          
GC ORFID: 46275How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3609Glimmer Score: 

          
Start: 3438989Stop: 3439759

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3609 translation of PA3609Homolog Bit Score 486.0

          
Other Homologs:  t_PA0204 (ORF: BLASTX 199.0), t_PA3609 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAGGCCCTACCTGCTCTGGAGCGCCACCGCGCTGGTGTACCTGTTCCTCTACGTACCGCTGGTGATC 
GTGGTGCTGTACTCCTTCAACGACTCGCGGCTGAACGCCGAGTGGGTGGGCTTCACCCTGGACTGGTACCGC 
AAGCTGTTCGGCAACCGCGACATGCTCCAGGCCGCCGCCAACTCGCTGGTCATCGCGCTGGTTTCGGCCAGC 
GTGGCGACCCTGCTCGGCACCCTCGCCGGGGTCGCCCTGCATCGCTTCAAGCTGCGCGTGCTGCCCCTGCTG 
GTGCTGACCCCAATCGCCATTCCGGAACTCCTGATGGGAGTCTCGCTGGTGATCTTCTTCATCGGCCTGAAC 
ATGAGCCTGGGCATGCTCTCGGTGACCCTCGCGCACATCACCTTCTCGGTCGGCTTCGTCGCCCTGGTGGTG 
CAGGCGCGCATGTCGGGCATGGACGAAAGCCTCACCGAGGCGGCCCGCGACCTCGGTGCCACGCCCTGGCAG 
AGCTTCCGCCTGGTGACCCTGCCGCTGATCATGCCGGGCATCGTCGCCGGCGCGCTGATGGCCTTCACCCTG 
TCCATCGACGACTTCGTGATCACCTTCTTCACCGCCGGCGGCGGCTTCGCCACCCTGCCGACGCAGATCTAC 
ACCATGATCAAGATCGCCGTGACGCCCGAAGTGAACGCCGTCTCCACCCTGCTGATGCTGCTCACCCTGGTG 
CTGATCGTGATCGCCTCGAAACTCTCCCCCAGCGCCATCAAGGGCCATTGA