ViewGene
Locus Name:
GeneID:
Location:

GeneID:3272
TrivialName: PA14_25400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25400
PAO1 Ortholog Locus:PA2990
Sequence Length:723
Protein Length:240
Start: 2221272
Stop: 2220550
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06378.1|AE004724_7 (AE004724) probable phosphodiesterase [Pseudomonas aeruginosa PAO1]
Identities = 238/240 (99%), Positives = 239/240 (99%)
Sequence:
GTGACTCTCATCTATGGACATCGCGGCGCCAAGGGCGAAGCGCCGGAAAACACCCTGGCCAGCTTCCAGCGC
TGCCTGGAGCATGGCGTCAACCGTTGCGAACTGGACCTGCACCTGTCCCGCGACGGCGAACTGATGGTGATC
CACGACCCGACCCTGAAGCGCACCACCGGCCGCCGCGGCAAGGTCGCCGAACACGACGCGGCCACCCTGGTC
ACCTACGACGCGCGCGAAGGCGGCCCCGGCTGGGTACGGCCGACGCCGATCCCGCGGCTGGAGGAGTTGTTC
GAGAAGTGCCCGTTCGAGCACTGGCAACTGGAAGTGAAGAGCGCCTCGCGCGAACGCGCGGCGCGGACGGTA
ACGCGGATCAGGGAGCTGACCGAGCGCTTCGGCAACCGCGACAAGGTCACCGTCACCAGCGGTTCGCGGACC
GTGCTCAAGGCCCTCAACGAACTGACCCCGGAGCTGTCGCGCGGGCTGGTCGCCGAATACGCCTGGCTCGAC
CCGCTGAAGGTCGCCCAGCACTATGGCTGTGCCCTGCTCGCCCTGAACTGGACCCTATGCACCCCGGAACGC
CTGCTCAAGGCCCAGCGCCAGGGGCTTCACGTCTCGGTGTGGACGGTCAACGAACCGGCGCTGATGCGCCGG
CTCGCCGACTTCGGCGTGGACAGCCTGATCACAGACTTTCCCGGTTTGGCCAGCGCCACCCTCGGGAATCGC
TGA
Translation:
MTLIYGHRGAKGEAPENTLASFQRCLEHGVNRCELDLHLSRDGELMVIHDPTLKRTTGRRGKVAEHDAATLV
TYDAREGGPGWVRPTPIPRLEELFEKCPFEHWQLEVKSASRERAARTVTRIRELTERFGNRDKVTVTSGSRT
VLKALNELTPELSRGLVAEYAWLDPLKVAQHYGCALLALNWTLCTPERLLKAQRQGLHVSVWTVNEPALMRR
LADFGVDSLITDFPGLASATLGNR*
AnnotationID:3280GeneID:3272
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:15
Gene Name:
Confidence Code:3
GeneProduct:putative phosphodiesterase
Cell Localization:()
Synonyms:ugpQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative glycerophosphoryl diester phosphodiesterase
Functional Category Confidence Code:5
COGs:COG0584,pfam03009
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55625.1| (AE016863) glycerophosphoryl diester phosphodiesterase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 240

 Score =  412 bits (1058), Expect = e-114
 Identities = 201/240 (83%), Positives = 213/240 (88%)

>gb|AAN67765.1|AE016408_3 (AE016782) glycerophosphoryl diester phosphodiesterase, putative
           [Pseudomonas putida KT2440]
          Length = 238

 Score =  400 bits (1028), Expect = e-111
 Identities = 197/238 (82%), Positives = 208/238 (87%)








 
Structural Features:
COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase 
[Energy production and conversion]
CD-Length = 257 residues,  98.4% aligned
Score =  165 bits (418), Expect = 4e-42
Identities = 91/254 (35%), Positives = 117/254 (46%), Gaps = 15/254 (5%)

pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family
CD-Length = 240 residues, 100.0% aligned
Score =  139 bits (352), Expect = 3e-34
Identities = 74/240 (30%), Positives = 105/240 (43%), Gaps = 14/240 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23689




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36065




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3272_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3272
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5251
                           PA2990_tr
                           translation of PA2990
                           240
                           99.16
                           99.58
                           0
                           1254.0
     

     
     
146775
                           gb|AAG06378.1|AE004724_7
                           (AE004724) probable phosphodiesterase [Pseudomonas aeruginosa PAO1]
                           240
                           98.75
                           99.58
                           0
                           1251.0
     

     
     
146776
                           gb|AAO55625.1|
                           (AE016863) glycerophosphoryl diester phosphodiesterase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           240
                           83.33
                           88.75
                           0
                           1054.0
     

     
     
146777
                           gb|AAN67765.1|AE016408_3
                           (AE016782) glycerophosphoryl diester phosphodiesterase, putative [Pseudomonas putida KT2440]
                           240
                           81.66
                           86.66
                           2
                           1024.0
     

     






      

          
GC ORFID: 46274How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2990Glimmer Score: 

          
Start: 2732653Stop: 2733375

          
Length: 723


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2990 translation of PA2990Homolog Bit Score 487.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene519 (ORF: BLASTX 412.0), t_PA2990 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACTCTCATCTATGGACATCGCGGCGCCAAGGGCGAAGCGCCGGAAAACACCCTGGCCAGCTTCCAGCGC 
TGCCTGGAGCATGGCGTCAACCGTTGCGAACTGGACCTGCACCTGTCCCGCGACGGCGAACTGATGGTGATC 
CACGACCCGACCCTGAAGCGCACCACCGGCCGCCGCGGCAAGGTCGCCGAACACGACGCGGCCACCCTGGTC 
ACCTACGACGCGCGCGAAGGCGGCCCCGGCTGGGTACGGCCGACGCCGATCCCGCGGCTGGAGGAGTTGTTC 
GAGAAGTGCCCGTTCGAGCACTGGCAACTGGAAGTGAAGAGCGCCTCGCGCGAACGCGCGGCGCGGACGGTA 
ACGCGGATCAGGGAGCTGACCGAGCGCTTCGGCAACCGCGACAAGGTCACCGTCACCAGCGGTTCGCGGACC 
GTGCTCAAGGCCCTCAACGAACTGACCCCGGAGCTGTCGCGCGGGCTGGTCGCCGAATACGCCTGGCTCGAC 
CCGCTGAAGGTCGCCCAGCACTATGGCTGTGCCCTGCTCGCCCTGAACTGGACCCTATGCACCCCGGAACGC 
CTGCTCAAGGCCCAGCGCCAGGGGCTTCACGTCTCGGTGTGGACGGTCAACGAACCGGCGCTGATGCGCCGG 
CTCGCCGACTTCGGCGTGGACAGCCTGATCACAGACTTTCCCGGTTTGGCCAGCGCCACCCTCGGGAATCGC 
TGA