ViewGene
Locus Name:
GeneID:
Location:

GeneID:3271
TrivialName: PA14_31660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31660
PAO1 Ortholog Locus:PA2544
Sequence Length:714
Protein Length:237
Start: 2750978
Stop: 2751691
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05932.1|AE004682_4 (AE004682) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/237 (100%), Positives = 237/237 (100%)
Sequence:
ATGGCCAGGCCATCCGCTCGACCAATCGCCGTGGCGAAGCGTGCGTGTCGCTGCGCCGGCGGCCGACAAGGA
ATGCGTTCCATGCCTGATCAGGTCACCGATGTCCGTCTGCTCGACGACGGCTATAGCCGCGAAGTCCGCTCG
CTTTTCTACCACGCCTACCGCCACGAACCGACCTTCGCCTACCTGATGGATGCGCAGCGCGCCGGCTACGAC
CAGCGCGTGCGTGCCTGCGTCCGGGAGATGGTCGAGCGCCATCTGGGCGAAGAGTTGCCGGCCATCGGCCTG
TTCATCGACGATCGGCTGGTCGCGGCGGCCCTGATCACGCCGCCGCAGCGGCGCCTGGATATCACCGAGAGC
TGGAGCTGGCGCCTGCGCATGCTGTTCAGCGTCGGCCTGGCCGCGACCCGGCGCTACCTGGATTACCACCGG
GCGGTGCAGGCCTGCCTGCCGGTCGGCCCCCATCACCAGTTGCCGATGCTCGGCGTGCATCCCGAGTACCAG
GGCAGGCAGATCGGCGAGCAGTTGCTGGCGGCCGTGCAGCGCTGGTGCGCCGAGGACTCCGCTTCGCAGGGG
CTGGTCCTGGATACCGGCAATGCGCGCTACCTGGACTTCTACCAGCGGCACGGCTACCGCGAGATCGGCGAG
GTGACGCTGGGAGCGGTGCGCGAGCACGTCCTCCTGCATCCTGGCGAGACGCCGGCGGCGACCTGA
Translation:
MARPSARPIAVAKRACRCAGGRQGMRSMPDQVTDVRLLDDGYSREVRSLFYHAYRHEPTFAYLMDAQRAGYD
QRVRACVREMVERHLGEELPAIGLFIDDRLVAAALITPPQRRLDITESWSWRLRMLFSVGLAATRRYLDYHR
AVQACLPVGPHHQLPMLGVHPEYQGRQIGEQLLAAVQRWCAEDSASQGLVLDTGNARYLDFYQRHGYREIGE
VTLGAVREHVLLHPGETPAAT*
AnnotationID:3279GeneID:3271
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:56
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA2544
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68499.1|AE016482_1 (AE016784) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 225

 Score =  270 bits (691), Expect = 4e-72
 Identities = 126/210 (60%), Positives = 155/210 (73%), Gaps = 3/210 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6545




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23687




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33118




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3271_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3271
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5250
                           PA2544_tr
                           translation of PA2544
                           237
                           99.99
                           99.99
                           0
                           1253.0
     

     
     
146772
                           gb|AAG05932.1|AE004682_4
                           (AE004682) hypothetical protein PA2544 [Pseudomonas aeruginosa PAO1]
                           237
                           99.99
                           99.99
                           0
                           1253.0
     

     
     
146773
                           gb|AAN68499.1|AE016482_1
                           (AE016784) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           245
                           52.65
                           65.30
                           28
                           684.0
     

     
     
146774
                           gb|AAO56249.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           48.79
                           64.11
                           36
                           654.0
     

     






      

          
GC ORFID: 46273How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2544Glimmer Score: 

          
Start: 2202948Stop: 2202235

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2544 translation of PA2544Homolog Bit Score 487.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8129 (ORF: BLASTX 260.0), t_PA2544 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGGCCATCCGCTCGACCAATCGCCGTGGCGAAGCGTGCGTGTCGCTGCGCCGGCGGCCGACAAGGA 
ATGCGTTCCATGCCTGATCAGGTCACCGATGTCCGTCTGCTCGACGACGGCTATAGCCGCGAAGTCCGCTCG 
CTTTTCTACCACGCCTACCGCCACGAACCGACCTTCGCCTACCTGATGGATGCGCAGCGCGCCGGCTACGAC 
CAGCGCGTGCGTGCCTGCGTCCGGGAGATGGTCGAGCGCCATCTGGGCGAAGAGTTGCCGGCCATCGGCCTG 
TTCATCGACGATCGGCTGGTCGCGGCGGCCCTGATCACGCCGCCGCAGCGGCGCCTGGATATCACCGAGAGC 
TGGAGCTGGCGCCTGCGCATGCTGTTCAGCGTCGGCCTGGCCGCGACCCGGCGCTACCTGGATTACCACCGG 
GCGGTGCAGGCCTGCCTGCCGGTCGGCCCCCATCACCAGTTGCCGATGCTCGGCGTGCATCCCGAGTACCAG 
GGCAGGCAGATCGGCGAGCAGTTGCTGGCGGCCGTGCAGCGCTGGTGCGCCGAGGACTCCGCTTCGCAGGGG 
CTGGTCCTGGATACCGGCAATGCGCGCTACCTGGACTTCTACCAGCGGCACGGCTACCGCGAGATCGGCGAG 
GTGACGCTGGGAGCGGTGCGCGAGCACGTCCTCCTGCATCCTGGCGAGACGCCGGCGGCGACCTGA