ViewGene
Locus Name:
GeneID:
Location:

GeneID:3270
TrivialName: PA14_50440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50440
PAO1 Ortholog Locus:PA1081
Sequence Length:750
Protein Length:249
Start: 4482440
Stop: 4481691
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04470.1|AE004539_12 (AE004539) flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PAO1]
Identities = 249/249 (100%), Positives = 249/249 (100%)
Sequence:
ATGGACAAGATGCTGTACGTCTCCATGAGCGGGGCCAGCCAGAACACCCTGGCGATGCGTGCTCATGCCAAC
AACCTGGCGAACATCTCGACCAGCGGCTTTCGTCGCGACTTCGAGCAGGCGCGTTCGATGCAGGTGTTCGGC
GACAGCTTCCCGGCGCGGGTATTCGCCATGAGCGAGCGGCCCGGTACCGATTTCAGCCATGGCAGCCTCCAG
GAAACCGGCAACGAGCTGGACATCGCCATCGACGGCGACGGCTTCGTCGCGGTCCAGGCGCCGGATGGCAGC
GAGGCCTACGTGCGTACCGCCGGCATGCACATCGACGCCCTCGGCATGCTGCGCACCGGCGACGGTTTGCCG
GTGCTCGGCAACGGCGGACCGATCGCCGTGCCGCCGGAGGAAAAGGTGGAGATCGGCCAGGACGGCACCATC
AGCATCCGCGCCCTTGGCGAGAACCCCAACGTGGTCGCCGTGGTGGACCGGATCAAGCTGGTCAACCCGAAC
CTGAAGCAGATGGAGAAGGGTACCGACGGCCTGCTGCACTACAAGCCGCAGCCGGGCGAGCAGGCGCCGCTG
GCCGACGCCAACGTGAAGGTGGTCTCCGGTTTCCTGGAAAGCAGCAACGTGAACGCGGTGGAAGAGATGACC
GCGATCCTCTCGCTGTCCCGCCAATTCGAGCTGCACGTGAAGATGATGCGCACCGCCGAGGACGATTCGGCG
GCCATGGCGCGGGTTTTGCAAATCAGCTAA
Translation:
MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQ
ETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTI
SIRALGENPNVVAVVDRIKLVNPNLKQMEKGTDGLLHYKPQPGEQAPLADANVKVVSGFLESSNVNAVEEMT
AILSLSRQFELHVKMMRTAEDDSAAMARVLQIS*
AnnotationID:3278GeneID:3270
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:27
Gene Name:flgF
Confidence Code:2
GeneProduct:flagellar basal-body rod protein FlgF
Cell Localization:()
Synonyms:PA1081
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4787
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG4787, FlgF, Flagellar basal body rod protein [Cell motility and secretion]
             CD-Length = 251 residues, 100.0% aligned
             Score =  340 bits (872), Expect = 1e-94







   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:6543




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23685




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3270
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5249
                           PA1081_tr
                           translation of PA1081
                           249
                           99.99
                           99.99
                           0
                           1254.0
     

     
     
146753
                           gb|AAG04470.1|AE004539_12
                           (AE004539) flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PAO1]
                           249
                           99.99
                           99.99
                           0
                           1254.0
     

     
     
146754
                           gb|AAN69964.1|AE016634_13
                           (AE016790) flagellar basal-body rod protein FlgF [Pseudomonas putida KT2440]
                           250
                           70.80
                           84.80
                           5
                           918.0
     

     
     
146755
                           gb|AAO55457.1|
                           (AE016862) flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato str. DC3000]
                           250
                           69.60
                           85.60
                           5
                           906.0
     

     
     
146756
                           gb|AAN56243.1|AE015761_13
                           (AE015761) flagellar basal-body rod protein FlgF [Shewanella oneidensis MR-1]
                           250
                           52.40
                           67.60
                           4
                           637.0
     

     






      

          
GC ORFID: 46272How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1081Glimmer Score: 

          
Start: 471468Stop: 472217

          
Length: 750


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1081 translation of PA1081Homolog Bit Score 487.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7896 (ORF: BLASTX 348.0), t_PA1081 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGATGCTGTACGTCTCCATGAGCGGGGCCAGCCAGAACACCCTGGCGATGCGTGCTCATGCCAAC 
AACCTGGCGAACATCTCGACCAGCGGCTTTCGTCGCGACTTCGAGCAGGCGCGTTCGATGCAGGTGTTCGGC 
GACAGCTTCCCGGCGCGGGTATTCGCCATGAGCGAGCGGCCCGGTACCGATTTCAGCCATGGCAGCCTCCAG 
GAAACCGGCAACGAGCTGGACATCGCCATCGACGGCGACGGCTTCGTCGCGGTCCAGGCGCCGGATGGCAGC 
GAGGCCTACGTGCGTACCGCCGGCATGCACATCGACGCCCTCGGCATGCTGCGCACCGGCGACGGTTTGCCG 
GTGCTCGGCAACGGCGGACCGATCGCCGTGCCGCCGGAGGAAAAGGTGGAGATCGGCCAGGACGGCACCATC 
AGCATCCGCGCCCTTGGCGAGAACCCCAACGTGGTCGCCGTGGTGGACCGGATCAAGCTGGTCAACCCGAAC 
CTGAAGCAGATGGAGAAGGGTACCGACGGCCTGCTGCACTACAAGCCGCAGCCGGGCGAGCAGGCGCCGCTG 
GCCGACGCCAACGTGAAGGTGGTCTCCGGTTTCCTGGAAAGCAGCAACGTGAACGCGGTGGAAGAGATGACC 
GCGATCCTCTCGCTGTCCCGCCAATTCGAGCTGCACGTGAAGATGATGCGCACCGCCGAGGACGATTCGGCG 
GCCATGGCGCGGGTTTTGCAAATCAGCTAA