ViewGene

Locus Name:
GeneID:
Location:

GeneID:327
TrivialName: PA14_56790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56790
PAO1 Ortholog Locus:PA4367
Sequence Length:2064
Protein Length:687
Start: 5058011
Stop: 5060074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07755.1|AE004852_8 (AE004852) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 687/687 (100%), Positives = 687/687 (100%)
Sequence:
TTGAAACTGGACTCCCGACACAGCCTCTCGCTCAAGCTGCTGCGTGTCGTGCTACTGGCGGCGCTGGCCGTT
GGCGTAGTGCTCAGTTGCGCGCAGATCGTCTTCGACGCCTACAAGGCCAAGCAGGCGGTGAGCAGCGACGCC
CAACGCATCCTCGCGATGGTCCGCGACCCTTCCACCCAGGCGGTCTACAGCCTCGACCGGGAAATGGCGATG
CAGGTCCTCGAAGGCCTGTTCCAGCACGAGGCGGTGCGCCAGGCGAGCATCGGCCATCCCGGCGAGCCGATG
CTGGCGGAGAAATCCAGGCCGCTGCTGGACCTGCCGACGCGCTGGCTGACCGACCCGATCCTCGGCCAGGAA
CGCACCTTCAGCATTCGACTGATCGGCCGCCCGCCCTATAGCGAATACTACGGCGACCTGAAGATCACCCTG
GACACCGCGCCCTACGGCGAGAACTTCGTCACCACTTCGGAAATCATCTTCATCTCCGGCATTCTCCGCGCC
CTGGCCATGGGCCTGGTGCTGTTCCTGGTCTACCACTGGATGCTGACCAAACCGCTGTCGAAGATCATCGAG
CACCTGGTCAGCATCAATCCCGACCGCCCCAGCCAGCACCAGTTGCCGCTGCTCAAGGGGCACGAACGCAAC
GAGCTGGGGCTCTGGGTGACCACCGCCAACCAGTTGCTCGCCTCGATCGAAAGCAACAGCCACCTGCGCCGC
GAGGCCGAAGACAACCTGCTGCGCATTTCCCAGTACGACTTCCTCACCGGCCTGCCGAACCGCCAGTTGCTG
CAACAGCAACTCGACCAGATCCTCGACGGCGCCGGCCGCCAGCAGCGCCGGGTAGCAGTGCTGTGCCTGGGC
CTCGACGATTTCAAGGGGATCAACGAGCAGTACACCTACCAGCTCGGCGACCAGTTGCTGATCGCCCTCGCC
GACCGCCTGCGCGGGCACAGCGCGCGGCTCGGTTCGCTGGCGCGCCTGGGCGGCGACCAGTTCGCCCTGGTC
CAGGCCGACATCGAGCAACCCTACGAGGCGGCCGAACTGGCGCAGAGCATCCTCGACGGCCTGGAAGCGCCG
TTCGAGATCGACCAGCACGAGGTGCGCCTGCGCGCCACCATCGGTATCACCCTGTTCCCCGAGGACGGCGAG
ACCACGGAGAAACTGCTGCAGAAGGCCGAGCAGACCATGACCCTGGCCAAGACCCGCTCGCGCAACCGCTAC
CAGTTCTACATCGCCAGCGTGGACAGCGAGATGCGTCGCCGCCGGGAACTGGAAAAGGACCTGCGCGACGCC
CTGCAGCGCCACGAGCTGCACCTCGTCTACCAGCCGCAGGTGGACTACCGCGACCACCGCGTGGTCGGCGTC
GAGGCACTGCTGCGCTGGCAACATCCGTTGCACGGCTTCGTCCCGCCGGACCTGTTCATCCCGCTGGCGGAA
CAGAACGGCAGCATCTTCAGCATCGGCGAGTGGGTGCTCGACCAGGCCTGCCGGCAATTGCGCGAATGGCAC
GACCAGGGCTTCGACGACCTGCGCATGGCGGTCAATCTTTCCACCGTGCAGCTCCACCACAACGCCCTGCCA
CGGGTGGTCAGCAACCTGCTGCAGGTCTACCGCCTGCCGGCGCGCAGCCTGGAGCTGGAAGTCACCGAGACC
GGCCTGATGGAGGACATCTCCACTGCCGCCCAGCACCTCCTCAGCCTGCGCCGCGCCGGCGCGCTGATCGCC
ATCGACGATTTCGGCACCGGCTATTCCTCGCTGAGCTACCTGAAGAGCCTGCCGCTGGACAAGATCAAGATC
GACAAGAGTTTCGTCCAGGACCTGCTGCAGGACGAGGACGACGCGACCATCGTTCGCGCCATCATCCAGCTC
GGCAAGAGCCTGGGCATGCAGGTGATCGCCGAGGGCGTGGAAACCGCCGAGCAGGAGGCGTACATCATCGCC
GAAGGTTGCAACGAAGGTCAGGGCTACCTGTACAGCAAGCCGCTGCCGGCCAGGGAACTGACCCAGTACCTC
AAGCAGGCGCGACGCCTGAGCCAGGCCACCAGCAGCGAACGGCCCTGA
Translation:
MKLDSRHSLSLKLLRVVLLAALAVGVVLSCAQIVFDAYKAKQAVSSDAQRILAMVRDPSTQAVYSLDREMAM
QVLEGLFQHEAVRQASIGHPGEPMLAEKSRPLLDLPTRWLTDPILGQERTFSIRLIGRPPYSEYYGDLKITL
DTAPYGENFVTTSEIIFISGILRALAMGLVLFLVYHWMLTKPLSKIIEHLVSINPDRPSQHQLPLLKGHERN
ELGLWVTTANQLLASIESNSHLRREAEDNLLRISQYDFLTGLPNRQLLQQQLDQILDGAGRQQRRVAVLCLG
LDDFKGINEQYTYQLGDQLLIALADRLRGHSARLGSLARLGGDQFALVQADIEQPYEAAELAQSILDGLEAP
FEIDQHEVRLRATIGITLFPEDGETTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDSEMRRRRELEKDLRDA
LQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWH
DQGFDDLRMAVNLSTVQLHHNALPRVVSNLLQVYRLPARSLELEVTETGLMEDISTAAQHLLSLRRAGALIA
IDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIA
EGCNEGQGYLYSKPLPARELTQYLKQARRLSQATSSERP*
AnnotationID:337GeneID:327
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 09:09:13
Gene Name:
Confidence Code:3
GeneProduct:putative GGDEF domain/EAL domain protein
Cell Localization:()
Synonyms:PA4367
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00563,COG2200
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66539.1|AE016282_7 (AE016777) GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 693

 Score = 1120 bits (2897), Expect = 0.0
 Identities = 561/677 (82%), Positives = 620/677 (91%)

>gb|AAO57815.1| (AE016871) GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 683

 Score = 1104 bits (2856), Expect = 0.0
 Identities = 550/682 (80%), Positives = 617/682 (90%)

>gb|AAN53426.1|AE015481_9 (AE015481) sensory box protein [Shewanella oneidensis MR-1]
          Length = 1515

 Score =  356 bits (914), Expect = 2e-97
 Identities = 188/436 (43%), Positives = 275/436 (63%), Gaps = 1/436 (0%)
Structural Features:
pfam00563, EAL, EAL domain.
CD-Length = 247 residues, 100.0% aligned
Score =  303 bits (778), Expect = 8e-83
Identities = 133/247 (53%), Positives = 170/247 (68%)

COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]
CD-Length = 256 residues,  99.6% aligned
Score =  297 bits (761), Expect = 8e-81
Identities = 135/257 (52%), Positives = 166/257 (64%), Gaps = 2/257 (0%)
Genomic Context:
Comment:
ReferenceID:14115
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17117
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:327_cdd.html
URL:
ReferenceID:17799
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:327

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
538 PA4367_tr translation of PA4367 687 99.99 99.99 0 3474.0
26751 gb|AAG07755.1|AE004852_8 (AE004852) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 687 99.85 99.99 0 3472.0
26752 gb|AAN66539.1|AE016282_7 (AE016777) GGDEF domain protein [Pseudomonas putida KT2440] 697 80.77 89.23 14 2898.0
26753 gb|AAO57815.1| (AE016871) GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] 687 79.91 89.81 4 2851.0
26787 gb|AAR35303.1| (AE017213) sensory box/response regulator [Geobacter sulfurreducens PCA] 738 33.33 47.69 129 882.0
GC ORFID: 43329How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4367Glimmer Score:
Start: 4321687Stop: 4323750
Length: 2064
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4367 translation of PA4367Homolog Bit Score 1342.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene1977 (ORF: BLASTX 1109.0), psyr_15may02_Scaffold1_revised_gene1407 (ORF: BLASTX 351.0), psyr_15may02_Scaffold2_revised_gene4046 (ORF: BLASTX 346.0), t_PA4367 (ORF: GLIMMER)
GC ORF Sequence
TTGAAACTGGACTCCCGACACAGCCTCTCGCTCAAGCTGCTGCGTGTCGTGCTACTGGCGGCGCTGGCCGTT
GGCGTAGTGCTCAGTTGCGCGCAGATCGTCTTCGACGCCTACAAGGCCAAGCAGGCGGTGAGCAGCGACGCC
CAACGCATCCTCGCGATGGTCCGCGACCCTTCCACCCAGGCGGTCTACAGCCTCGACCGGGAAATGGCGATG
CAGGTCCTCGAAGGCCTGTTCCAGCACGAGGCGGTGCGCCAGGCGAGCATCGGCCATCCCGGCGAGCCGATG
CTGGCGGAGAAATCCAGGCCGCTGCTGGACCTGCCGACGCGCTGGCTGACCGACCCGATCCTCGGCCAGGAA
CGCACCTTCAGCATTCGACTGATCGGCCGCCCGCCCTATAGCGAATACTACGGCGACCTGAAGATCACCCTG
GACACCGCGCCCTACGGCGAGAACTTCGTCACCACTTCGGAAATCATCTTCATCTCCGGCATTCTCCGCGCC
CTGGCCATGGGCCTGGTGCTGTTCCTGGTCTACCACTGGATGCTGACCAAACCGCTGTCGAAGATCATCGAG
CACCTGGTCAGCATCAATCCCGACCGCCCCAGCCAGCACCAGTTGCCGCTGCTCAAGGGGCACGAACGCAAC
GAGCTGGGGCTCTGGGTGACCACCGCCAACCAGTTGCTCGCCTCGATCGAAAGCAACAGCCACCTGCGCCGC
GAGGCCGAAGACAACCTGCTGCGCATTTCCCAGTACGACTTCCTCACCGGCCTGCCGAACCGCCAGTTGCTG
CAACAGCAACTCGACCAGATCCTCGACGGCGCCGGCCGCCAGCAGCGCCGGGTAGCAGTGCTGTGCCTGGGC
CTCGACGATTTCAAGGGGATCAACGAGCAGTACACCTACCAGCTCGGCGACCAGTTGCTGATCGCCCTCGCC
GACCGCCTGCGCGGGCACAGCGCGCGGCTCGGTTCGCTGGCGCGCCTGGGCGGCGACCAGTTCGCCCTGGTC
CAGGCCGACATCGAGCAACCCTACGAGGCGGCCGAACTGGCGCAGAGCATCCTCGACGGCCTGGAAGCGCCG
TTCGAGATCGACCAGCACGAGGTGCGCCTGCGCGCCACCATCGGTATCACCCTGTTCCCCGAGGACGGCGAG
ACCACGGAGAAACTGCTGCAGAAGGCCGAGCAGACCATGACCCTGGCCAAGACCCGCTCGCGCAACCGCTAC
CAGTTCTACATCGCCAGCGTGGACAGCGAGATGCGTCGCCGCCGGGAACTGGAAAAGGACCTGCGCGACGCC
CTGCAGCGCCACGAGCTGCACCTCGTCTACCAGCCGCAGGTGGACTACCGCGACCACCGCGTGGTCGGCGTC
GAGGCACTGCTGCGCTGGCAACATCCGTTGCACGGCTTCGTCCCGCCGGACCTGTTCATCCCGCTGGCGGAA
CAGAACGGCAGCATCTTCAGCATCGGCGAGTGGGTGCTCGACCAGGCCTGCCGGCAATTGCGCGAATGGCAC
GACCAGGGCTTCGACGACCTGCGCATGGCGGTCAATCTTTCCACCGTGCAGCTCCACCACAACGCCCTGCCA
CGGGTGGTCAGCAACCTGCTGCAGGTCTACCGCCTGCCGGCGCGCAGCCTGGAGCTGGAAGTCACCGAGACC
GGCCTGATGGAGGACATCTCCACTGCCGCCCAGCACCTCCTCAGCCTGCGCCGCGCCGGCGCGCTGATCGCC
ATCGACGATTTCGGCACCGGCTATTCCTCGCTGAGCTACCTGAAGAGCCTGCCGCTGGACAAGATCAAGATC
GACAAGAGTTTCGTCCAGGACCTGCTGCAGGACGAGGACGACGCGACCATCGTTCGCGCCATCATCCAGCTC
GGCAAGAGCCTGGGCATGCAGGTGATCGCCGAGGGCGTGGAAACCGCCGAGCAGGAGGCGTACATCATCGCC
GAAGGTTGCAACGAAGGTCAGGGCTACCTGTACAGCAAGCCGCTGCCGGCCAGGGAACTGACCCAGTACCTC
AAGCAGGCGCGACGCCTGAGCCAGGCCACCAGCAGCGAACGGCCCTGA