ViewGene
Locus Name:
GeneID:
Location:

GeneID:3269
TrivialName: PA14_58970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58970
PAO1 Ortholog Locus:
Sequence Length:708
Protein Length:235
Start: 5255206
Stop: 5255913
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84234.1| (AY273869) putative phage protein [Pseudomonas aeruginosa]
Identities = 235/235 (100%), Positives = 235/235 (100%)
Sequence:
ATGACTCGCTCTGCTCTCTCGACCATCGCCTACGAGGCCCTGGTGCGTGCCCGCCGCAAATTCAGCAACCGA
GAGGAGCGCTGCATCCGCGAAACCTGGACCGCCGAACAGGAACTGGTGCTGCTGCGCCTGTATCCGGATATG
CCGAACGAGGTCCTGGCAGCCAGGTTGAACAAAACGCTCCAGCAGATCTGCTCCAGAGCGTATCGGCTCGGG
CTGAAAAAAAGCCCTGAGTTCTCCAAGAAGATCCGGCAGGACTGGGGCAGCGCAACTCGGTTCAAGAAGGGA
AACACCCCATGGAACTGCGGCATGAAGGGGCTGCCCGCGCGAGGACGCGCACCAGAAACGCAGTTCAAGAAG
GGGCAAAAGCCCCACACATGGCTCCCAGTCGGCAGCACGCGGGTCAGCGCTGATGGCTACCTGCAACGAAAG
ATCTCGGATACCGGCTATCCCCCCCGGGACTGGAAGGGCATCCACATCCTGCTCTGGGAAGAACACTTCGGC
CCCATCCCAACCGGCCATTGCGTCTGCTTCAAGGACAACAACAAGCAGAACGTCGTCATCGACAACCTGGAG
CTCATCACCCGGGCCGAACGCATGCGCCGCAACTCCATCCATCGCTATCCACCTGAGCTGAAGAGCGCAATC
CGCGTCATCAGCAAGCTCAAACGCACCATTCAGGAGGTCGAGCATGAAGAACAAGATTGA
Translation:
MTRSALSTIAYEALVRARRKFSNREERCIRETWTAEQELVLLRLYPDMPNEVLAARLNKTLQQICSRAYRLG
LKKSPEFSKKIRQDWGSATRFKKGNTPWNCGMKGLPARGRAPETQFKKGQKPHTWLPVGSTRVSADGYLQRK
ISDTGYPPRDWKGIHILLWEEHFGPIPTGHCVCFKDNNKQNVVIDNLELITRAERMRRNSIHRYPPELKSAI
RVISKLKRTIQEVEHEEQD*
AnnotationID:3277GeneID:3269
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:03
Gene Name:RL110
Confidence Code:4
GeneProduct:putative phage protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP7 (psedomonas aeruginsa strain C, plasmid pKLC102)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6541




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3269
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
146752
                           gb|AAP84234.1|
                           (AY273869) putative phage protein [Pseudomonas aeruginosa]
                           235
                           99.99
                           99.99
                           0
                           1255.0
     

     






      

          
GC ORFID: 46271How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL110Glimmer Score: 

          
Start: 4518885Stop: 4519592

          
Length: 708


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL110 235 Homolog: No significant similarity () translation of RL110Homolog Bit Score 488.0

          
Other Homologs:  t_RL110 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCGCTCTGCTCTCTCGACCATCGCCTACGAGGCCCTGGTGCGTGCCCGCCGCAAATTCAGCAACCGA 
GAGGAGCGCTGCATCCGCGAAACCTGGACCGCCGAACAGGAACTGGTGCTGCTGCGCCTGTATCCGGATATG 
CCGAACGAGGTCCTGGCAGCCAGGTTGAACAAAACGCTCCAGCAGATCTGCTCCAGAGCGTATCGGCTCGGG 
CTGAAAAAAAGCCCTGAGTTCTCCAAGAAGATCCGGCAGGACTGGGGCAGCGCAACTCGGTTCAAGAAGGGA 
AACACCCCATGGAACTGCGGCATGAAGGGGCTGCCCGCGCGAGGACGCGCACCAGAAACGCAGTTCAAGAAG 
GGGCAAAAGCCCCACACATGGCTCCCAGTCGGCAGCACGCGGGTCAGCGCTGATGGCTACCTGCAACGAAAG 
ATCTCGGATACCGGCTATCCCCCCCGGGACTGGAAGGGCATCCACATCCTGCTCTGGGAAGAACACTTCGGC 
CCCATCCCAACCGGCCATTGCGTCTGCTTCAAGGACAACAACAAGCAGAACGTCGTCATCGACAACCTGGAG 
CTCATCACCCGGGCCGAACGCATGCGCCGCAACTCCATCCATCGCTATCCACCTGAGCTGAAGAGCGCAATC 
CGCGTCATCAGCAAGCTCAAACGCACCATTCAGGAGGTCGAGCATGAAGAACAAGATTGA